Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00429 ATGGAAGAGAAACAGAGCGATGTGGTGTTGTTTGGAACGTGGTATAGCTCATACTGCACTAGAATTGTGCTAGCACTCAAGATCAAAGGCATAAATTTTGAGTACGTGGAAGAAGATTTAGCAAATAAGAGTGAATTGCTTCTCAAGTACAATCCAGTTCATCAAAAAGTCCCTGTACTCGTCCATAAAGGAAAGCCAATTGCAGAGTCCTTTGTCATTCTTGAATACATAGAAGAGCATTGGAACTACCATCCCAAAATTCTTCCTGATCACCCCTATGAAAGAGCCAAAATTCGCTTCTGGGCTCAATTCTATGATCAAAAGATTCTCTTAGGGGCCTTGCCGATCCTCAAATCCGAAGGAGAAGAAAGAGAGAAAGCTGTTGAGGAGCAATCAAAACTGATAAGGGTATTTGAAGAAGGAATGAAGAAAGATTTTCCTGGAAAAGTTCCCTTCTACCAAGGAAAAAACTTGGGACTTCTTGACATAGTTGTGGGGCCTAATGCATGCAACTATTCGGCGCTGCGTGAGGTTGTTGGAGATGTAATTGACTCAAAAAGAAACCCTGATTTTTTCTCATGGGTGGATGCTTTGAAGGGACATCCTCTGATTAAGGAAACGCTTCCTCCTCACCATAAAATGGTACAGAAACTGAAAGAGAAGATCCATCTAAAGCCTAAAGATAGCTAA 690 40.87 MEEKQSDVVLFGTWYSSYCTRIVLALKIKGINFEYVEEDLANKSELLLKYNPVHQKVPVLVHKGKPIAESFVILEYIEEHWNYHPKILPDHPYERAKIRFWAQFYDQKILLGALPILKSEGEEREKAVEEQSKLIRVFEEGMKKDFPGKVPFYQGKNLGLLDIVVGPNACNYSALREVVGDVIDSKRNPDFFSWVDALKGHPLIKETLPPHHKMVQKLKEKIHLKPKDS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4091010 4091794 - Lsi04G004290.1 Lsi04g00429 660478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00429 229 CDD GST_N_Tau 8 81 - -
Lsi04g00429 229 Gene3D - 88 227 - -
Lsi04g00429 229 SFLD Main.3: Omega- and Tau-like 4 221 IPR045073 -
Lsi04g00429 229 SUPERFAMILY GST C-terminal domain-like 80 220 IPR036282 -
Lsi04g00429 229 Pfam Glutathione S-transferase, N-terminal domain 8 78 IPR004045 -
Lsi04g00429 229 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 6 85 IPR004045 -
Lsi04g00429 229 CDD GST_C_Tau 92 220 IPR045074 GO:0004364|GO:0006749
Lsi04g00429 229 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 4 222 - -
Lsi04g00429 229 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 222 IPR045073 -
Lsi04g00429 229 SFLD Glutathione Transferase (cytosolic) 4 221 IPR040079 -
Lsi04g00429 229 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 91 221 IPR010987 -
Lsi04g00429 229 SUPERFAMILY Thioredoxin-like 7 109 IPR036249 -
Lsi04g00429 229 Gene3D Glutaredoxin 1 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00429 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - vvi:100260235 303.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00429 Lsi-Chr4:4091010 Lsi06g01302 Lsi-Chr6:23562948 2.66E-55 dispersed
Lsi02g00069 Lsi-Chr2:589600 Lsi04g00429 Lsi-Chr4:4091010 1.44E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g909 . . . . . . Bma14g01643 . . Cmo18g01176 . Cma18g01154 . Car18g01063 . . . . . . . . . . Cla05g02445 Cam05g2631 Cec05g2664 Cco05g2702 Clacu05g2634 Cmu05g2488 Cre05g2601 . . . . Lsi04g00429 . . Cme10g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012942 0 1 0 2 0 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00429 Lsi_Chr04 FPKM 0.146054 0.21437 0.666291 1.314686 0.183929 0.462876 0.443409 0.0 0.0 0.232358