Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00431 ATGGGAAGAGTGAGCTTGCCACCACCTGTTTGTGATACAAACCTCTCTCACAGGTTGTCTTTTGAGAACAACAACAACAATAATAACAACAACCATCTTCGTGAAGCTTCTTTTTCTTCCTACTTGAATCATGCAGAGAAAGAATTTGTTCGTAAACTTGCTGAATCGACTCGAGATCGCTCTAATTCTGTTACAACTCAAGAAGAGGATGGAGATATAGAAGTTTTTGGAGCAGAGAAATATTTCAATGGAGGGGTATTTGAAACAACTCCAGAGCCCCTTAAATTCCGCCCCAAAAAGCAACAACAAAGGATGATTCTTCACCCCAAGAAGCCAAAAACTAGTACTCCAAGTGTTCGTTCTGAATCCAGTTGGAATAGCCAAAATGCATTGTTGCAGAGTAGTACTGTAAATACAAATTCTAATTCTTCAAATCTTACAAAGAAGAAGAAATCATCACAATTGGCAAAAGGTTTTCTTTATAAATGCTATTGCTGCGACAAGAAATCAGTGGAATCCGTAAATAATCAAACCAAATCCAAATCAAAATCAAAATCAAAGCCGAAACAGAGACAACCAACAAAAGCAGGTATAAATTTCACGTTTCAAAGTTCACTCCCAGCTGAGACAGCCATGAAAATGCAAATTCAAGTTGAAGAACAACAAGGGAGAAAATCAATTGAGGTTTTCGGATCTTCTCTAATGGCCGGGAAGCCACCCAACGTGGATACTCTGAATCTGAATCACATGGAGAAGAGGCTTTCAATGATGACATGGAACGACATCGTTCCAAGAGTTAAGGATTCTTCAAATTCAAATTCAAATTCAAATATGTCCAATCTAATCCACAATGACGATGTGGAAAGTGATGCAAGTTCGGATCTTTTCGAGATTGAGAGCTTAACCGGGAACCCCAATCCGTTTCTCACAAGACAAGGCTCTGATTCTACGGATTGTGTAACACCCACCACTTGTTATGCACCAAGTGAAGCCAGTATCGAGTGGAGTGTCGTCACCGCCAGTGCCGGCGATTTCTCCGTCGTGTCGGATTACGACGAACGCCGCCTCTCCACCAGCAGCCCTGTCAGAAACATCACCGCCGCCGGCTCTGCCACCTACATGATTAAATCTAGCTACGGGAAAGATGTGAAAGAGATTCAGAAGCGGCGTTCGAATCTTCTGATGGGTTGCAAGAATCAGAAGGCGGTGAGAGTGGCCGGAGATAAGTACGGTTCTGCGGCGGAAGTTCATCGGAGATCGGAGTCGTTTGGAAGACTGACGAGGTTGGAAACTCAGAGGCTTGCTACAAACTCACTTCCTCGTCAGTATTCGCCTAAAATCTCTAATATCTTGTATGTTTAG 1362 42.66 MGRVSLPPPVCDTNLSHRLSFENNNNNNNNNHLREASFSSYLNHAEKEFVRKLAESTRDRSNSVTTQEEDGDIEVFGAEKYFNGGVFETTPEPLKFRPKKQQQRMILHPKKPKTSTPSVRSESSWNSQNALLQSSTVNTNSNSSNLTKKKKSSQLAKGFLYKCYCCDKKSVESVNNQTKSKSKSKSKPKQRQPTKAGINFTFQSSLPAETAMKMQIQVEEQQGRKSIEVFGSSLMAGKPPNVDTLNLNHMEKRLSMMTWNDIVPRVKDSSNSNSNSNMSNLIHNDDVESDASSDLFEIESLTGNPNPFLTRQGSDSTDCVTPTTCYAPSEASIEWSVVTASAGDFSVVSDYDERRLSTSSPVRNITAAGSATYMIKSSYGKDVKEIQKRRSNLLMGCKNQKAVRVAGDKYGSAAEVHRRSESFGRLTRLETQRLATNSLPRQYSPKISNILYV 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4110299 4111660 + Lsi04G004310.1 Lsi04g00431 660480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00431 453 MobiDBLite consensus disorder prediction 114 128 - -
Lsi04g00431 453 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1-RELATED 11 429 IPR039615 GO:0009638
Lsi04g00431 453 MobiDBLite consensus disorder prediction 89 128 - -
Lsi04g00431 453 PANTHER PROTEIN PHYTOCHROME KINASE SUBSTRATE 1 11 429 - -
Lsi04g00431 453 MobiDBLite consensus disorder prediction 174 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00431 - - - bhj:120081995 757.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00431 Lsi-Chr4:4110299 Lsi03g01672 Lsi-Chr3:27912523 4.49E-06 dispersed
Lsi11g00981 Lsi-Chr11:16084031 Lsi04g00431 Lsi-Chr4:4110299 6.18E-59 transposed
Lsi02g00066 Lsi-Chr2:575934 Lsi04g00431 Lsi-Chr4:4110299 1.91E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g904 . Blo16g01118 Bda01g02160 Bda11g01219 . Bpe10g00867 Bma14g01640 Bma15g00161 . Cmo18g01181 . Cma18g01157 . Car18g01066 Sed08g1988 Cpe09g00173 Cpe01g01461 Bhi07g01573 Tan04g1087 Cmetu10g1435 Lac13g0312 Hepe10g1735 . . Cla05g02448 Cam05g2634 Cec05g2667 Cco05g2705 Clacu05g2637 Cmu05g2491 Cre05g2604 . . Cone6ag0592 Cone9ag0595 Lsi04g00431 Csa05g02443 Chy10g00995 Cme10g00422 Blo06g00904 Blo11g00769 . Bda11g01219 Bpe11g01639 Bpe02g02346 Bma01g00095 Bma06g00683 . . . Cma04g01652 . Car04g01693 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004283 3 1 3 5 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00431 Lsi_Chr04 FPKM 587.993225 602.75415 271.761658 262.189941 1100.233643 1243.20105 1042.068481 268.589081 281.182953 259.452148