Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00434 ATGATCATGGATGGTGAAAATGGAATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAACAACAACAGCCATGTTCCTCTTCCGCAAACAACGGAGGAACAACAACGACAATAACAACAACAGCTCCAAATTCAAATCTTCAATCTTCTTGTTCACCCAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACAAAAGTCGATGGCCGTGGCCGTCGGATTCGGATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGTCACAAGTCCGACGGCGAAACCATCGAGTGGCTTTTACAACAGGCTGAACCTGCAGTTATCGCTGCTACCGGTACCGGTACCATTCCAGCTAATTTCACTTCGCTTAATATCTCTCTCCGTAGCTCCGGCTCTACCATCTCTGCTCCTTCTCATCTCCGGACGAGCTATTTTAGTCCCACACAATTTGCCGTTAGAACAAGATCCGATCTTTGGGATAGAAACAACAATCATAATCATAATCTCGTCGATGATTCCTCTACATTCTTGAATTTCAACTCTCATAATTACGTGAACGCGTTCAAGCAAGATCAAGGCGGAATTGACGTCACCGAGGCGGGAAAGAAACGACGGTCGGAGCAGTCGGAATCATCGTCGGAGAATTATTTGGTTCAAACGAGTACTGGGTCAATTCCGGCGAGTCAAAGCAGTCCATTACCGGCGACATTTTGGATGGTGACGAATCCAAGCAATCAAGGGAGTGATCCGATGTGGACATTTCCGTCGGTGGGTAACAGCAGCATGTTGAGAGGGGCAGGGGCGGGTGGCGGCGGTGGGGGGTTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGGCAACAGTTGGGGACAGGGATGGGAGGTGGCGGTGGCGGTGGCGGTGGTCCGGCGACGGAGAGCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTTTCAGAATCTCAAACATCTAATAATCCTGATCAATCATAG 1068 49.34 MIMDGENGIRRPNFPLQLLEKKKEEQQQPCSSSANNGGTTTTITTTAPNSNLQSSCSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNHNHNLVDDSSTFLNFNSHNYVNAFKQDQGGIDVTEAGKKRRSEQSESSSENYLVQTSTGSIPASQSSPLPATFWMVTNPSNQGSDPMWTFPSVGNSSMLRGAGAGGGGGGFHFMNLPPPMALLPSGQQLGTGMGGGGGGGGGPATESHLGMLAALSAYRTTMPGLSVSESQTSNNPDQS 355
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 4137810 4138877 + Lsi04G004340.1 Lsi04g00434 660483
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00434 355 MobiDBLite consensus disorder prediction 212 242 - -
Lsi04g00434 355 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 350 IPR005333 GO:0003700
Lsi04g00434 355 MobiDBLite consensus disorder prediction 28 61 - -
Lsi04g00434 355 ProSiteProfiles TCP domain profile. 68 122 IPR017887 -
Lsi04g00434 355 MobiDBLite consensus disorder prediction 1 76 - -
Lsi04g00434 355 MobiDBLite consensus disorder prediction 223 242 - -
Lsi04g00434 355 Pfam TCP family transcription factor 67 220 IPR017887 -
Lsi04g00434 355 PANTHER TRANSCRIPTION FACTOR TCP23 11 350 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00434 Lsi-Chr4:4137810 Lsi04g00792 Lsi-Chr4:7451543 1.56E-39 dispersed
Lsi04g00710 Lsi-Chr4:6498851 Lsi04g00434 Lsi-Chr4:4137810 1.72E-47 transposed
Lsi07g01491 Lsi-Chr7:21755091 Lsi04g00434 Lsi-Chr4:4137810 1.29E-39 transposed
Lsi09g01743 Lsi-Chr9:26074586 Lsi04g00434 Lsi-Chr4:4137810 3.26E-38 transposed
Lsi02g00060 Lsi-Chr2:554602 Lsi04g00434 Lsi-Chr4:4137810 4.23E-60 wgd
Lsi04g00434 Lsi-Chr4:4137810 Lsi06g01472 Lsi-Chr6:25231360 1.83E-86 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25136 PF03634 TCP 1.30E-38 No_clan Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00434 - - csv:101206263 578.941