Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00434 ATGATCATGGATGGTGAAAATGGAATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAACAACAACAGCCATGTTCCTCTTCCGCAAACAACGGAGGAACAACAACGACAATAACAACAACAGCTCCAAATTCAAATCTTCAATCTTCTTGTTCACCCAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACAAAAGTCGATGGCCGTGGCCGTCGGATTCGGATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGTCACAAGTCCGACGGCGAAACCATCGAGTGGCTTTTACAACAGGCTGAACCTGCAGTTATCGCTGCTACCGGTACCGGTACCATTCCAGCTAATTTCACTTCGCTTAATATCTCTCTCCGTAGCTCCGGCTCTACCATCTCTGCTCCTTCTCATCTCCGGACGAGCTATTTTAGTCCCACACAATTTGCCGTTAGAACAAGATCCGATCTTTGGGATAGAAACAACAATCATAATCATAATCTCGTCGATGATTCCTCTACATTCTTGAATTTCAACTCTCATAATTACGTGAACGCGTTCAAGCAAGATCAAGGCGGAATTGACGTCACCGAGGCGGGAAAGAAACGACGGTCGGAGCAGTCGGAATCATCGTCGGAGAATTATTTGGTTCAAACGAGTACTGGGTCAATTCCGGCGAGTCAAAGCAGTCCATTACCGGCGACATTTTGGATGGTGACGAATCCAAGCAATCAAGGGAGTGATCCGATGTGGACATTTCCGTCGGTGGGTAACAGCAGCATGTTGAGAGGGGCAGGGGCGGGTGGCGGCGGTGGGGGGTTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGGCAACAGTTGGGGACAGGGATGGGAGGTGGCGGTGGCGGTGGCGGTGGTCCGGCGACGGAGAGCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTTTCAGAATCTCAAACATCTAATAATCCTGATCAATCATAG 1068 49.34 MIMDGENGIRRPNFPLQLLEKKKEEQQQPCSSSANNGGTTTTITTTAPNSNLQSSCSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNHNHNLVDDSSTFLNFNSHNYVNAFKQDQGGIDVTEAGKKRRSEQSESSSENYLVQTSTGSIPASQSSPLPATFWMVTNPSNQGSDPMWTFPSVGNSSMLRGAGAGGGGGGFHFMNLPPPMALLPSGQQLGTGMGGGGGGGGGPATESHLGMLAALSAYRTTMPGLSVSESQTSNNPDQS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4137810 4138877 + Lsi04G004340.1 Lsi04g00434 660483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00434 355 MobiDBLite consensus disorder prediction 212 242 - -
Lsi04g00434 355 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 350 IPR005333 GO:0003700
Lsi04g00434 355 MobiDBLite consensus disorder prediction 28 61 - -
Lsi04g00434 355 ProSiteProfiles TCP domain profile. 68 122 IPR017887 -
Lsi04g00434 355 MobiDBLite consensus disorder prediction 1 76 - -
Lsi04g00434 355 MobiDBLite consensus disorder prediction 223 242 - -
Lsi04g00434 355 Pfam TCP family transcription factor 67 220 IPR017887 -
Lsi04g00434 355 PANTHER TRANSCRIPTION FACTOR TCP23 11 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00434 - - - csv:101206263 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00434 Lsi-Chr4:4137810 Lsi04g00792 Lsi-Chr4:7451543 1.56E-39 dispersed
Lsi04g00710 Lsi-Chr4:6498851 Lsi04g00434 Lsi-Chr4:4137810 1.72E-47 transposed
Lsi07g01491 Lsi-Chr7:21755091 Lsi04g00434 Lsi-Chr4:4137810 1.29E-39 transposed
Lsi09g01743 Lsi-Chr9:26074586 Lsi04g00434 Lsi-Chr4:4137810 3.26E-38 transposed
Lsi02g00060 Lsi-Chr2:554602 Lsi04g00434 Lsi-Chr4:4137810 4.23E-60 wgd
Lsi04g00434 Lsi-Chr4:4137810 Lsi06g01472 Lsi-Chr6:25231360 1.83E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g894 . Blo16g01121 . Bda11g01222 Bpe13g01416 . . Bma15g00272 Cmo04g01729 Cmo18g01183 . Cma18g01160 . Car18g01068 Sed06g1538 . Cpe01g01458 Bhi07g01576 Tan04g1091 Cmetu10g1669 Lac13g0309 Hepe10g1732 . . Cla05g02451 Cam05g2637 Cec05g2670 Cco05g2708 Clacu05g2640 Cmu05g2494 Cre05g2607 . Cone19ag0952 . . Lsi04g00434 Csa05g02440 Chy10g00992 Cme10g00425 . . . Bda11g01222 . . . Bma06g00680 . . . . . Car04g01690 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00863 . 50 270 TCP Transcription Factor Family AT5G23280 64.0 1.7e-66 249.6
Lsi04g00792 . 37 258 TCP Transcription Factor Family AT5G23280 60.3 1.6e-61 233.0
Lsi09g01921 . 59 337 TCP Transcription Factor Family AT2G45680 54.1 2.0e-65 246.5
Lsi04g00434 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Lsi02g00060 CCT,ECH 17 115 TCP Transcription Factor Family AT3G47620 83.8 2.7e-39 160.2
Lsi04g00710 . 135 217 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Lsi04g00710 . 135 227 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Lsi07g01491 . 48 315 TCP Transcription Factor Family AT3G27010 56.9 1.5e-59 226.9
Lsi09g00863 . 46 269 TCP Transcription Factor Family AT5G08330 62.1 1.2e-64 243.4
Lsi04g00792 . 9 256 TCP Transcription Factor Family AT5G08330 56.0 8.4e-63 237.3
Lsi04g00710 . 134 365 TCP Transcription Factor Family AT1G35560 50.4 4.7e-43 172.2
Lsi06g01407 . 32 134 TCP Transcription Factor Family AT5G60970 74.0 8.8e-40 161.4
Lsi07g00939 . 32 138 TCP Transcription Factor Family AT3G02150 69.9 2.4e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25136 PF03634 TCP 1.30E-38 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00434 Lsi_Chr04 FPKM 3.659277 7.167708 5.683076 6.35573 11.209098 4.979768 7.399395 6.415087 4.651616 2.937632