Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00434 | ATGATCATGGATGGTGAAAATGGAATCCGAAGACCTAATTTTCCATTACAATTGTTGGAGAAGAAAAAGGAAGAACAACAACAGCCATGTTCCTCTTCCGCAAACAACGGAGGAACAACAACGACAATAACAACAACAGCTCCAAATTCAAATCTTCAATCTTCTTGTTCACCCAAGAAGCCACCTCCCAAAAGGGCCACCACCAAAGACCGTCACACAAAAGTCGATGGCCGTGGCCGTCGGATTCGGATGCCTGCCCTTTGTGCTGCTAGGGTTTTTCAACTCACTCGAGAGCTCGGTCACAAGTCCGACGGCGAAACCATCGAGTGGCTTTTACAACAGGCTGAACCTGCAGTTATCGCTGCTACCGGTACCGGTACCATTCCAGCTAATTTCACTTCGCTTAATATCTCTCTCCGTAGCTCCGGCTCTACCATCTCTGCTCCTTCTCATCTCCGGACGAGCTATTTTAGTCCCACACAATTTGCCGTTAGAACAAGATCCGATCTTTGGGATAGAAACAACAATCATAATCATAATCTCGTCGATGATTCCTCTACATTCTTGAATTTCAACTCTCATAATTACGTGAACGCGTTCAAGCAAGATCAAGGCGGAATTGACGTCACCGAGGCGGGAAAGAAACGACGGTCGGAGCAGTCGGAATCATCGTCGGAGAATTATTTGGTTCAAACGAGTACTGGGTCAATTCCGGCGAGTCAAAGCAGTCCATTACCGGCGACATTTTGGATGGTGACGAATCCAAGCAATCAAGGGAGTGATCCGATGTGGACATTTCCGTCGGTGGGTAACAGCAGCATGTTGAGAGGGGCAGGGGCGGGTGGCGGCGGTGGGGGGTTTCATTTCATGAATCTGCCACCACCAATGGCACTTTTGCCAAGTGGGCAACAGTTGGGGACAGGGATGGGAGGTGGCGGTGGCGGTGGCGGTGGTCCGGCGACGGAGAGCCACTTGGGGATGTTGGCGGCTCTAAGTGCTTATAGAACAACGATGCCGGGATTGTCAGTTTCAGAATCTCAAACATCTAATAATCCTGATCAATCATAG | 1068 | 49.34 | MIMDGENGIRRPNFPLQLLEKKKEEQQQPCSSSANNGGTTTTITTTAPNSNLQSSCSPKKPPPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTISAPSHLRTSYFSPTQFAVRTRSDLWDRNNNHNHNLVDDSSTFLNFNSHNYVNAFKQDQGGIDVTEAGKKRRSEQSESSSENYLVQTSTGSIPASQSSPLPATFWMVTNPSNQGSDPMWTFPSVGNSSMLRGAGAGGGGGGFHFMNLPPPMALLPSGQQLGTGMGGGGGGGGGPATESHLGMLAALSAYRTTMPGLSVSESQTSNNPDQS | 355 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 4137810 | 4138877 | + | Lsi04G004340.1 | Lsi04g00434 | 660483 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00434 | 355 | MobiDBLite | consensus disorder prediction | 212 | 242 | - | - | |
| Lsi04g00434 | 355 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 11 | 350 | IPR005333 | GO:0003700 | |
| Lsi04g00434 | 355 | MobiDBLite | consensus disorder prediction | 28 | 61 | - | - | |
| Lsi04g00434 | 355 | ProSiteProfiles | TCP domain profile. | 68 | 122 | IPR017887 | - | |
| Lsi04g00434 | 355 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
| Lsi04g00434 | 355 | MobiDBLite | consensus disorder prediction | 223 | 242 | - | - | |
| Lsi04g00434 | 355 | Pfam | TCP family transcription factor | 67 | 220 | IPR017887 | - | |
| Lsi04g00434 | 355 | PANTHER | TRANSCRIPTION FACTOR TCP23 | 11 | 350 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00434 | Lsi-Chr4:4137810 | Lsi04g00792 | Lsi-Chr4:7451543 | 1.56E-39 | dispersed | |
| Lsi04g00710 | Lsi-Chr4:6498851 | Lsi04g00434 | Lsi-Chr4:4137810 | 1.72E-47 | transposed | |
| Lsi07g01491 | Lsi-Chr7:21755091 | Lsi04g00434 | Lsi-Chr4:4137810 | 1.29E-39 | transposed | |
| Lsi09g01743 | Lsi-Chr9:26074586 | Lsi04g00434 | Lsi-Chr4:4137810 | 3.26E-38 | transposed | |
| Lsi02g00060 | Lsi-Chr2:554602 | Lsi04g00434 | Lsi-Chr4:4137810 | 4.23E-60 | wgd | |
| Lsi04g00434 | Lsi-Chr4:4137810 | Lsi06g01472 | Lsi-Chr6:25231360 | 1.83E-86 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25136 | PF03634 | TCP | 1.30E-38 | No_clan | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00434 | - | - | csv:101206263 | 578.941 |