Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00435 ATGAGTTATGCTTCGATCAAAGCTATAGAGACGAAGTCAATAGTGGACGACCAGCAATGGCTCACTTACTGGGTTTTGTACTCGCTCATGACTCTCTTCGAGCTCACATTTGCCAAAGTACTGGAAGTGGTTGCCATTTGGCCATATGTGAAACTAATAATAATGAGTTGGCTAGTTCTACCACACTTCAATGGAGCAGCACACGTTTACAAAAACTTCATTAGGCCACACTATATGAACCCTCAAACTTCTACGCTATGGTATATCCCTCGAAAGACCAAAGATGTTTTCAGTACCTCAGATGATGTGTTAACTGCTGCTGAGAAGTACATGGAAGACCATGGAACTGAAGCTTTCGAAAGGCTTATGTATAAGGCTGAAAGAGAGAGATCGAGGAGAAACAACAATTACATGATTTTCGATGATGATTATGCATATTGA 441 40.82 MSYASIKAIETKSIVDDQQWLTYWVLYSLMTLFELTFAKVLEVVAIWPYVKLIIMSWLVLPHFNGAAHVYKNFIRPHYMNPQTSTLWYIPRKTKDVFSTSDDVLTAAEKYMEDHGTEAFERLMYKAERERSRRNNNYMIFDDDYAY 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4139967 4144473 + Lsi04G004350.1 Lsi04g00435 660484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00435 146 Pfam TB2/DP1, HVA22 family 3 76 IPR004345 -
Lsi04g00435 146 PANTHER HVA22-LIKE PROTEINS 3 145 IPR004345 -
Lsi04g00435 146 PANTHER HVA22-LIKE PROTEIN 3 145 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00435 K17279 REEP5_6; receptor expression-enhancing protein 5/6 - csv:101220261 283.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00435 Lsi-Chr4:4139967 Lsi06g01655 Lsi-Chr6:26819731 3.91E-18 dispersed
Lsi02g00059 Lsi-Chr2:547142 Lsi04g00435 Lsi-Chr4:4139967 4.20E-50 wgd
Lsi04g00435 Lsi-Chr4:4139967 Lsi06g01474 Lsi-Chr6:25250184 4.01E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g893 . . . . . Bpe10g00865 . Bma15g00162 . . . . . Car18g01069 Sed04g0698 Cpe09g00169 . Bhi07g01578 Tan04g1092 Cmetu10g1278 . . . . Cla05g02452 Cam05g2638 Cec05g2671 . Clacu05g2641 Cmu05g2495 Cre05g2608 Cone13ag0962 Cone19ag0953 . . Lsi04g00435 Csa05g02439 Chy10g00991 Cme10g00426 Blo06g00903 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000844 3 4 0 3 3 3 5 2 3 2 3 3 3 3 3 4 3 5 2 3 3 3 3 2 3 3 3 5 3 2 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00435 Lsi_Chr04 FPKM 18.491072 19.765341 21.947397 21.446383 33.645119 31.609501 35.24749 23.120893 24.492386 22.518394