Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00441 ATGGATCCTGGTGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTAAAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTCGTTGAGATTGTTAGGTATTCATTTTGTTCCGATTTCTGGTTTCATGAAAACAGATCTGGTGAAGATGCCTGCACTGCCTATGTGACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGTGCAACAATTGTAGATCAAAGAGTATGTATAACACGGTGGGGACATTTTGAGGACGAATTTGGTTTTTGGAGTAGGCCTTCTGGTTACCATGAAGAAGACAGTACTCCTGCTTCGGCACAAAGAAGTCAGTTTATTTCCAGTGCTGGTAACGCAGTGACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGTTGGGTAAAGATACATTAACCAAAGCCAAAGCCTTTGACGAATCTCATCAGGTTTCAGCAACGGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGCCTGACTGACATGATAGGTGCGGGTTTTGAAGCGGTTAAAACCGTGGATGAGAAGTACCATGTATTGCAGACCACCAAATCAGCTATATCAGCCACAGGAAGAACAGCCGCTGCCGCTGCAGATACCGTGGTCAGGAGTAGCTACTTCTCTAGGGGAGCTCTTTTCATGTCTGATGCCCTGAATCGAGCAGCCAAAGTTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAG 774 46.38 MDPGGYTVEVTGLSPKATEKDVLDFFAFSGAIELVEIVRYSFCSDFWFHENRSGEDACTAYVTFKDAYSQETACLLSGATIVDQRVCITRWGHFEDEFGFWSRPSGYHEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMIGAGFEAVKTVDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSRGLEH 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4227822 4230900 + Lsi04G004410.1 Lsi04g00441 660490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00441 257 SUPERFAMILY RNA-binding domain, RBD 3 94 IPR035979 GO:0003676
Lsi04g00441 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 85 IPR000504 GO:0003723
Lsi04g00441 257 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 255 - -
Lsi04g00441 257 CDD RRM_Vip1_like 8 89 IPR034360 -
Lsi04g00441 257 Gene3D - 5 91 IPR012677 -
Lsi04g00441 257 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00441 - - - csv:101221355 431.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00441 Lsi-Chr4:4227822 Lsi01g01676 Lsi-Chr1:15310697 2.08E-33 dispersed
Lsi07g01175 Lsi-Chr7:17263369 Lsi04g00441 Lsi-Chr4:4227822 4.62E-44 transposed
Lsi10g00258 Lsi-Chr10:4191090 Lsi04g00441 Lsi-Chr4:4227822 3.02E-47 transposed
Lsi02g01493 Lsi-Chr2:20757011 Lsi04g00441 Lsi-Chr4:4227822 4.49E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g881 . . . . . . . . Cmo04g01723 Cmo18g01187 . Cma18g01164 . Car18g01073 Sed06g1544 Cpe09g00165 . Bhi07g01588 Tan04g1099 Cmetu10g1298 Lac13g0302 Hepe10g1726 . . . . . . . . . Cone13ag0968 Cone19ag0958 . . Lsi04g00441 Csa05g02433 Chy10g00986 Cme10g00432 . Blo11g00763 Bda07g01461 . Bpe11g01634 . . . . Cmo04g02886 . Cma04g01644 . Car04g01685 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001744 2 4 2 0 1 2 2 2 2 2 2 2 2 2 2 3 1 4 2 2 2 2 2 2 2 2 2 5 6 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00441 Lsi_Chr04 FPKM 2.942675 3.716037 0.533755 0.636974 0.868056 0.957945 0.609098 2.035715 2.28696 2.47836