Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00442 ATGACAAGCAATGGGATGGCTTTTTTCCCAGCAAATTTCATGCTACAAACTTCCCATGAAGATCATGATCATCATCACCACTCTAATTCTCCACCATCTCTCAACCCAATTCTACCTTCTTGCACACCCCAAGATTTTCATGGAGTTGCATCTTTTCTAGGAAAACGATCTATGTCATTTTCAGGGGCGGAAATGGTGGAAGAAGGGAATAACGGTGAGGATGAATTTTCTGATGATGGGTCACAGGCAGGTGAGAAAAAGAGAAGACTTAACATGGAGCAAGTGAAAACACTTGAGAAAAATTTCGAATTGGGAAATAAGCTTGAACCTGAAAGAAAAATGCAGCTGGCTAGAGCCCTTGGTTTACAGCCCAGACAAATTGCTATTTGGTTTCAAAACAGAAGGGCTCGCTGGAAAACTAAGCAGCTTGAAAAAGACTATGATCTTCTCAAAAGACAATTTGAAGCTATCAAATCAGATAACGAAGCCCTCAAATCCCACAATCAAAAACTTCAAGCAGAGATAATGGCACTAAAAAGTAGAGAGCCAACAGAATCAATCAATCTGAACAAAGAAACAGAGGGATCTTGCAGTAACAGAAGTGAAAACAGCTCTGATAATATAAAATTAGATATCTCAAGAACACCAGCCATTGACAGTCCTCATCAGCATCAGCATCAGCATCAGCATCAACATCCAACAAATAGGCCTCTTTTTCCCACTTCTTCATTAAGGCCTCCAGCTTTGGCTCAACTCTTTCAAACCTCTTCAAGATCATCAGATCATCCACCTAAGCAAATTGATAATCATCATCAAATCCCTAAAGAAGAAAGCAGCAGTTTGTCCAATATGTTCTGTGGAATGGATGATCACTCTGGCTTCTGGCCTTGGTTGGAGCAACAACATTTCAACTGA 915 40.33 MTSNGMAFFPANFMLQTSHEDHDHHHHSNSPPSLNPILPSCTPQDFHGVASFLGKRSMSFSGAEMVEEGNNGEDEFSDDGSQAGEKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFEAIKSDNEALKSHNQKLQAEIMALKSREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPHQHQHQHQHQHPTNRPLFPTSSLRPPALAQLFQTSSRSSDHPPKQIDNHHQIPKEESSSLSNMFCGMDDHSGFWPWLEQQHFN 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4239452 4241129 + Lsi04G004420.1 Lsi04g00442 660491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00442 304 Pfam Homeobox associated leucine zipper 141 181 IPR003106 GO:0006355|GO:0043565
Lsi04g00442 304 MobiDBLite consensus disorder prediction 232 262 - -
Lsi04g00442 304 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Lsi04g00442 304 MobiDBLite consensus disorder prediction 182 284 - -
Lsi04g00442 304 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Lsi04g00442 304 Gene3D - 78 147 - -
Lsi04g00442 304 SUPERFAMILY Homeodomain-like 75 143 IPR009057 -
Lsi04g00442 304 Coils Coil 133 181 - -
Lsi04g00442 304 CDD homeodomain 86 142 IPR001356 GO:0003677
Lsi04g00442 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 4 304 - -
Lsi04g00442 304 MobiDBLite consensus disorder prediction 189 211 - -
Lsi04g00442 304 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Lsi04g00442 304 MobiDBLite consensus disorder prediction 64 86 - -
Lsi04g00442 304 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Lsi04g00442 304 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Lsi04g00442 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 4 304 IPR045224 GO:0003700
Lsi04g00442 304 SMART HOX_1 84 145 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00442 Lsi-Chr4:4239452 Lsi05g00818 Lsi-Chr5:12772727 6.26E-40 dispersed
Lsi02g01495 Lsi-Chr2:20804999 Lsi04g00442 Lsi-Chr4:4239452 1.37E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25137 PF00046 Homeodomain 3.00E-15 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00442 K09338 - csv:101221595 560.836