Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00445 ATGGAAGCTCATGGCAGCGGATTCCGCCGCGTGCTCGTGCTCGCCTTTTGCGTCGCCGGGATTTGGTCCGCTTATATTTACCAAGGCGTTCTTCAGGAGACTCTGTCCACGAAGCGCTTTGGTTCCGACGGGAAGAGATTTGAACACCTTTCCTTCCTTAACCTAGCACAAAATGTTGTCTGTTTAATATGGTCATACATAATGATAAAGCTCTGGTCCAGTCGTAGCACTGGTGGTGCACCTTGGTGGGCATACTGGAGTGCTGGTATTACGAACACGATTGGACCAGCTATGGGAATTGAAGCTTTAAAATATATAATGATGCTGATGGGTACGTTAGTTTATGGTATTAAGTACACATTTCCAGAATATATGTGTACTTTTCTGGTTGCTGGAGGAGTATCTACATTTGCACTCTTAAAGACTAGCTCAAAGACTATCAGCAAGTTGGCACATCCAAATGCACCCCTTGGATATGGACTTTGCTTCCTGAACCTCGCATTTGATGGATTCACGAATGCCACTCAGGATTCCATTTCAGCAAGAACCTTCCTTTCTTGTACAGGGATAGATTTTTTGTTTTCAATATTTGGGTTGAGTGGGGGAATCGAACCTAAATTTGTGTCAGTTGAATTATGCTCATGTTGGTTTTTGTACATGATTAGTTTATACGAATTTATCATGTACCCAAAAACAAGTGCATGGGACATAATGTTGGGAATGAATCTCTGGGGTACAATATACAATATGATTTATATGTTTGGGTGGCCTCATGGTACTGGATATCATGCCATAGAATTCTGCAGGCAGCATCCTGAAGCAGCGTGGGACATTCTTCTGTATTGTCTCTGTGGAGCAGTAGGCCAAAATTTTATCTTCCTTACAATTAGCCGATTCGGTTCCCTCGCCAATACCACCATTACCACAACTCGCAAGTTTGTCAGCATTGTGGTATCCTCTGTGCTCAGCGGAAATCCTCTGTCATCCAAGCAGTGGGGCTGCGTTGTAATGGTCTTCTCGGGGCTATCATATCAAATCTACCTCAAGTGGAGGAAGCTGCAAAAGTTGCAGAGAAAGAGAAAGACAACCTAA 1092 43.59 MEAHGSGFRRVLVLAFCVAGIWSAYIYQGVLQETLSTKRFGSDGKRFEHLSFLNLAQNVVCLIWSYIMIKLWSSRSTGGAPWWAYWSAGITNTIGPAMGIEALKYIMMLMGTLVYGIKYTFPEYMCTFLVAGGVSTFALLKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSISARTFLSCTGIDFLFSIFGLSGGIEPKFVSVELCSCWFLYMISLYEFIMYPKTSAWDIMLGMNLWGTIYNMIYMFGWPHGTGYHAIEFCRQHPEAAWDILLYCLCGAVGQNFIFLTISRFGSLANTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVVMVFSGLSYQIYLKWRKLQKLQRKRKTT 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4278963 4282221 - Lsi04G004450.1 Lsi04g00445 660494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00445 363 PANTHER SOLUTE CARRIER FAMILY 35 MEMBER B 7 183 IPR013657 GO:0055085
Lsi04g00445 363 PANTHER SOLUTE CARRIER FAMILY 35 MEMBER B 228 361 IPR013657 GO:0055085
Lsi04g00445 363 Pfam UAA transporter family 15 180 IPR013657 GO:0055085
Lsi04g00445 363 Pfam UAA transporter family 227 348 IPR013657 GO:0055085
Lsi04g00445 363 PANTHER BNAA09G45580D PROTEIN 7 183 - -
Lsi04g00445 363 PANTHER BNAA09G45580D PROTEIN 228 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00445 K15275 SLC35B1; solute carrier family 35 (UDP-galactose transporter), member B1 - csv:101222296 591.652
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00445 Lsi-Chr4:4278963 Lsi10g01343 Lsi-Chr10:17670394 2.21E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g876 . Blo16g01127 . Bda11g01228 Bpe13g01424 Bpe10g00860 . Bma15g00166 Cmo04g01718 Cmo18g01191 . Cma18g01167 . Car18g01076 Sed06g1547 Cpe09g00162 Cpe01g01451 Bhi07g01593 Tan04g1107 Cmetu10g1539 Lac13g0297 Hepe10g1722 . . Cla05g02462 Cam05g2649 Cec05g2682 Cco05g2718 Clacu05g2652 Cmu05g2505 Cre05g2619 Cone13ag0972 Cone19ag0962 . . Lsi04g00445 Csa05g02429 Chy10g00982 Cme10g00436 Blo06g00898 . . Bda11g01228 . . . Bma06g00674 . . . Cma04g01639 . Car04g01681 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006928 1 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00445 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0