Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00446 ATGCGCCTCTGTCGGTGGCCAACGGCGTCCTTTTCGCCGGCGCCAAATGGTCTGATATACGCCATGGACATGGAAAATGAAGAAATAGTCTGGTCCTACAACACCGGAGGTACTGCGTACGGAGGAATTACTGTGAGTAATGGATGTTTCTATTTAGGGCTTCGATTCAAAATTGGGCTATCGATATTCCGCCCCGCTTGGACTGCACTGCTGAAACAAAAAGCTGTCTTTGCATGCTTTTCTGATGAGGTTTGCAGCACTGTTTTGAGTTTCAGCTTCAAGAACATGAAGACTTCCTGGGTTTCTTTTTCTTTTTGGTTTCCTGCTTTCATTTTTGCTGTTATCTTTCCAGTTTCAACAGGGCAACTTCCTGCAAGCGAAACCAGAATTCTATTTGAGATTCAAAAACTTCTGGAGTATCCTGTTGCTCTTCAGGGATGGTCAAACTGGACCAACTTCTGCTATTTACCTCCTTCTTCTTCTCTCAAAATTGTCTGTTCTGGTAATCACATAACAGAATTAACTGTCATTGGAAACAAAAGCTCTCCTTCCAAAGCCCCAAAATCATTTTCTGTGAGTTCCATCCCTTCTCAGCAGACTCTTTCAAATAGTTTCTCCATCGATTCCTTCTTCACTGTTCTCACCAAGCTTTCAAACCTGAGAGTTTTATCATTAGCGTCTTTGGGATTGTGGGGTCCTTTTCCTTCCAAAGTTAACAGGCTCTCGTCTTTGGAAGTGCTTAACATAAGCTCAAATTTTATCTATGGAGGCATCCCTACAACAATTTCAAAACTTCAAAGTCTCAAGAGCCTTGTTTTGGCTGACAATTTGTTCAATGGAACTGTTCCAGATCTTAGAGGCCTTGCAGTTCTTGAAGAGCTGAATTTAGGACAAAATCAACTAGGACAAAAAGTTCCTGCTCTGGGAGAAACTCTTGTAATCGTCATACTGAGGAAGAACTTGTTCAGATCTGAAATCCCTTCAAGAATCTTGGAACTCAATAAGCTTCAGCTATTAGATATCTCCTACAACAAGTTTCTTGGGCCAATCCACGCTTCTCTTTTCTCTCTACCTGCAGTTCAGTATCTCAACCTAGCTTATAACCAATTAAGTGGGGCACTCTCTTTTAACACAACTTGCAACAGAAACCTTAAGTTTGTAGACATTTCACACAACCTCTTGATTGGAAAATTACCTTCTTGCATCAAACCAAATTCGTCGAATCGCACAGTAAATATTTCTTGGAACTGCTTGTCAAGTGGAAGCTCGAAGGACCAGCATACTTATTCCTACTGCCACAAGGAAGCAATGGCTGTGAAGCCTCCAGGTGACTCACAGAAACAGAAACTTAGCATCAAACTGGGTCTCATGCTTGCTATCATTGGAGGCGTTGTTGGAATTTCAGGTGTTGTTCTGTTATTAGTTTGTGTAATCATCCGAAACAGAAGAAGATTTGGAGAGACCAAATATGAGAAATCTACAGCTGATAAACTCTCTGTTCGTGGCTCTCCACTTCCTAACAGGCGTGTACCCCAGACAAGGCTACCAGCACTTGGGCTGCCGCCATATCGGGTCTTCACATTGGAGGAAATCGAAGACGTTACAAAAAACTTCGACCCATCAAGCTTGGCCGCCGAAGAACCCCAAGCAAAGACATATAAAGGGTGGCTGCCTGATGGTTCAGTGGTCCTGATCAAGTGCTTTAAAATAAAGCAAAAACTTGTACCTCAAGCCTTAGCGCGGCACATGGAAGAACTGCCAAATCTGAGGCATCGGCATTTGGTCAGTGTTCTTGGACATTGCATTTTCACTCATCAAGATCAATTGAACCCAGCTAGCACTGTCTTCGTTGTTAATGAATACATATCCAACGGCTCATTGAAGGATTGTCTTACAGATTGGAAAAGGAAGGATGCTCTGAAATGGCCGCAGAGAATGGGAATAACCATCGGCATTGCCAGGGGAATACAGCATCTGCATACTGGAATGGCGGTTGGGATCTTTGGGAACGATGTCCAGATCGATAACATTTTGTTGGATGAGACGCTGACCGCAAAGATAAGCAATTACAACATTCTCATGCCGCTAAAGAATGCAGAGAGCGGGTTGAATGTAACAAAAAGAACCGAGAATCCGGAGAAGGAAGATATCTTTCAATTTGGTGCTATTTTGCTACAAGTTATTAATGGTAGACCGATCACAGCGACAAGTGAGCTGGATGATCTGAAGAGTGAGTTTGAAAGTGGCTTGGCAGAAGTGCTGAAATTACGGGGCGTTATTGATCCTTCAATTCAGGGTTCTTTTGCCTTTGATTCACTGAAAACCACAGTTCAAATTGCCATCAACTGCCTCAACAAAGATCCAGCCAAGCGACCTTCCATTGAAGATGTACTCTGGAATATGCAGTATTCAATGCAAGTTCAAGAAGGATGGACAAGTAGTGGAAACCTCGGAACTTTCATATAG 2466 42.86 MRLCRWPTASFSPAPNGLIYAMDMENEEIVWSYNTGGTAYGGITVSNGCFYLGLRFKIGLSIFRPAWTALLKQKAVFACFSDEVCSTVLSFSFKNMKTSWVSFSFWFPAFIFAVIFPVSTGQLPASETRILFEIQKLLEYPVALQGWSNWTNFCYLPPSSSLKIVCSGNHITELTVIGNKSSPSKAPKSFSVSSIPSQQTLSNSFSIDSFFTVLTKLSNLRVLSLASLGLWGPFPSKVNRLSSLEVLNISSNFIYGGIPTTISKLQSLKSLVLADNLFNGTVPDLRGLAVLEELNLGQNQLGQKVPALGETLVIVILRKNLFRSEIPSRILELNKLQLLDISYNKFLGPIHASLFSLPAVQYLNLAYNQLSGALSFNTTCNRNLKFVDISHNLLIGKLPSCIKPNSSNRTVNISWNCLSSGSSKDQHTYSYCHKEAMAVKPPGDSQKQKLSIKLGLMLAIIGGVVGISGVVLLLVCVIIRNRRRFGETKYEKSTADKLSVRGSPLPNRRVPQTRLPALGLPPYRVFTLEEIEDVTKNFDPSSLAAEEPQAKTYKGWLPDGSVVLIKCFKIKQKLVPQALARHMEELPNLRHRHLVSVLGHCIFTHQDQLNPASTVFVVNEYISNGSLKDCLTDWKRKDALKWPQRMGITIGIARGIQHLHTGMAVGIFGNDVQIDNILLDETLTAKISNYNILMPLKNAESGLNVTKRTENPEKEDIFQFGAILLQVINGRPITATSELDDLKSEFESGLAEVLKLRGVIDPSIQGSFAFDSLKTTVQIAINCLNKDPAKRPSIEDVLWNMQYSMQVQEGWTSSGNLGTFI 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4296077 4300344 + Lsi04G004460.1 Lsi04g00446 660495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00446 821 Gene3D Transferase(Phosphotransferase) domain 1 622 813 - -
Lsi04g00446 821 Gene3D Ribonuclease Inhibitor 124 310 IPR032675 -
Lsi04g00446 821 Gene3D Ribonuclease Inhibitor 311 435 IPR032675 -
Lsi04g00446 821 PANTHER OS07G0166700 PROTEIN 100 817 IPR045272 GO:0004714|GO:0006468
Lsi04g00446 821 SUPERFAMILY L domain-like 146 420 - -
Lsi04g00446 821 PANTHER BNAC05G10630D PROTEIN 100 817 - -
Lsi04g00446 821 SUPERFAMILY Protein kinase-like (PK-like) 514 800 IPR011009 -
Lsi04g00446 821 ProSiteProfiles Protein kinase domain profile. 538 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00446 821 Gene3D Phosphorylase Kinase; domain 1 512 609 - -
Lsi04g00446 821 Pfam Leucine Rich Repeat 383 403 IPR001611 GO:0005515
Lsi04g00446 821 Pfam Protein kinase domain 558 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00446 - - - csv:101222534 1313.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00446 Lsi-Chr4:4296077 Lsi01g01104 Lsi-Chr1:9118453 5.20E-07 dispersed
Lsi02g00490 Lsi-Chr2:4155714 Lsi04g00446 Lsi-Chr4:4296077 9.04E-116 transposed
Lsi03g00383 Lsi-Chr3:4478085 Lsi04g00446 Lsi-Chr4:4296077 3.42E-114 transposed
Lsi08g00626 Lsi-Chr8:14603324 Lsi04g00446 Lsi-Chr4:4296077 1.26E-09 transposed
Lsi03g01469 Lsi-Chr3:25557288 Lsi04g00446 Lsi-Chr4:4296077 1.76E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g866 . . . . . Bpe10g00858 . Bma15g00250 . Cmo18g01192 . Cma18g01168 . Car18g01077 . Cpe09g00160 . Bhi07g01594 . . Lac13g0294 . . . Cla05g02463 Cam05g2650 Cec05g2685 Cco05g2719 Clacu05g2654 Cmu05g2506 Cre05g2622 Cone13ag0974 Cone19ag0964 . . Lsi04g00446 Csa05g02427 Chy10g00981 Cme10g00438 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012316 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83558 PF00069 Pkinase 6.90E-13 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00446 Lsi_Chr04 FPKM 5.358555 4.282266 6.775011 7.523521 8.301587 9.167606 7.995357 10.98548 11.402796 11.01113