Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00455 ATGTCGACGATTGGGTTCAATCCTCTGCTTTATCACTGTGGTAAAGGGAAACACAGATTTCACTATCGTCCTAGATTCAATGTGCTCAAACCCTGTTCCTTTAGTTACTGTCCCAATAAGCTTCTTTATCGTGGCCGAAACAGTTTTGTCAATTACAATTCTTATAGACTTCCTGCTTTTAGAGCTAGCACTACTAATGCCCCTCTTCTTCAAACATTCCAATCTATGGATGTCTTTTTCAAGGAAACGTTTCCTCTCAAGCGCAATGAAAAGTTGGAGGGAAGGATCTCTGTCAGACTAGCCCAGGGGAAGGAGCAGAATCAATGGGAGCTTACTGTAGGATGTAACCTTGCTGGGAAATGGATTCTTCATTGGGGTGTGTCCTTAATCGACGACAGCGGCAGCGAATGGGATCAACCTCCTAAAGAAATGATACCCCCGGGTTCAATACCCATCAAAGATTATGCTATTGAGACACCATTGAAGAAATCATCCTCATCTTCTTCGGGAGACTTTGTTCATGAAGTGAAGATAGATCTCGTTCCCGACAAAACAATTGCAGCTATAAATTTTGTTTTGAAGGATGAAGAAACTGGAATTTGGTATCAGCACAAAGGGAGAGATTTTAAGGTGCCTCTTTTAGACTACCATGGTGAAGATGGCAATATAGTTGGAACCAAAAAGGGCTTGGGTTTATGGCCAGGGGCTTTGGGTCAGCTATCCAACCTCCTTGTCAAAGCAGAATCAAATTCTAAAGATCAAAGAAGCAGTGGTGAATCTGGAGATGCAAAGGAGGAGAAGAAGTATTTGGAAGGATTCTATGAAGAGCTGCCTATTGTAAAAGAAGTAGCTGTTGATAATTCGGTCAGTGTTTCAGTTAGAAAATGTCCTGAAACAACCAAATATCATTTATATTTGGAAACTGATCTACCTGGAGATGTTATTGTTCATTGGGGAGCGTGCAGAGATGAGACTAGGAAATGGGAGATTCCAGCTGGTCCTCATCCTCCAGAAACAACAGTATTCAAAAACAAAGCCTTGCGTACCCTACTGCAGAATGAGAACTCTTGGTTAAACTATGAGGGAGATGATTTCTACATCCCCTTCTCAAGTTCTGGTAACTTGCCTGATCAACAGAGAAAGAGCGAATTAGAAGACACAGGAGTATCTAGAAAATCTGGAGAAGAATCTGAAGGAGTTTCTGTTACTGCTTATACTGATGGAATTATCAAGGAAATAAGAAATTTGGTTACTGACATTTCTTCTCAGAAGACTAAAAAGAAAAAAACCAAAGAAGCACAAGAAAGCATTCTTCAGGAAATTGAAAAATTGGCGGCTGAAGCCTATAGTATCTTCAGAAGTTCTACTCCAACTTTCACAGAGGAAATAATTGAGACCCCTAAACCTGTAGAACCACCTGTGCAAATATCCTCAGGCACAGGTTCGGGTTTTGAAATATTGTGCCAAGGGTTTAATTGGGAATCTCACAAATCTGGAAGATGGTACATGGAACTTAAAGAGAAAGCTGCAGAATTATCCTCCCTTGGTTTCACTGTGCTATGGTTGCCACCTCCAACTGAATCTGTGTCACCGGAGGGGTACATGCCCAAGGACTTGTATAATTTAAATTCGAGATATGGTAACATTGATGAGCTGAAGGATGTTGTGAAGACGTTCCATGATGTTGGGATAAAGGTTCTTGGTGATGCTGTCCTAAATCATCGTTGTGCACATTTTAAAAATCAAAATGGTATTTGGAATATATTTGGTGGTCGCTTAAATTGGGATGATCGTGCAGTAGTTTCAGATGATCCACATTTTCAGGGTAGGGGCAACAAAAGTAGCGGAGATAACTTCCATGCTGCGCCTAACATTGATCATTCACAAGATTTTGTGAGAAATGATATTAAAGAATGGTTATGCTGGTTAAGAAAGGAAATTGGGTATGACGGATGGAGGCTTGATTTTGTCAGAGGATTCTGGGGTGGTTATGTGAAGGATTACTTGGATGCAAGTGAACCTTACTTTGCTGTTGGCGAATACTGGGATTCCCTGAGCTATACGTATGGTGAGATGGATCATAATCAAGATGCTCATAGGCAGAGGATTGTTGACTGGATAAATGCTACTAATGGAACTGCTGGGGCATTTGATGTTACTACAAAAGGGATCCTTCATTCTGCACTTGATAGATGTGAATATTGGCGATTATCAGATGAGAAAGGAAAGCCTCCCGGAGTTGTTGGATGGTGGCCCTCTCGTGCTGTTACCTTTATAGAGAATCATGACACTGGATCTACTCAGGGTCATTGGAGATTTCCTAGTGGGAAGGAAATGCAAGGATATGCTTACATCCTGACTCATCCTGGAACACCATCAGTATTCTATGATCACATTTTCTCCCACTACAAATCTGAAGTTGCAGCACTTATTTCTCTCAGAAAACGAAATAAAGTTAACTGCCGGAGTGTAGTTAAAATTGAGAAGGCAGAAAGGGATGTCTATGCAGCCACCATTGATGAAAAGGTTGCAGTGAAGATTGGACCAGGCAATTTCGAACCGCCTAGCAGATCCAGTGGATGGTCATTGGTTATTGAGGGAAAAGACTACAAGGGCTGCCCCGATCTCACAAGAACATTTCATCATCCCATAAAAATGGCTATACTTCGGCTGCTGCTAACATTGTCTTTGCTGGCTACTACGGCATTTGCTGACATTGGAAACTTCGATGACTACTGGAAAGCACGCGCTGCCGAGGCTGAAAAAGCCGCCACCGATGCCTTCGAGCCTAATCCTGAGAACGTCACCAACTCCTTCAATGCCGAAGTTGGCCAGGTATTGAGTGGAAGCAACAGTACGAGGAGGAATTTGAAGAAATATACAGGCCCATGTCGAGCCACTAATCCCATTGATCGGTGCTGGAGATGCGACCCCAATTGGGCCAATAACCGGAAGAAGCTAGCCGATTGTGTTTTGGGTTTTGGCCGCAAGACCATTGGTGGAAAGTTGGGTCCATACTACGTCGTGAATGACTCGTCGGATTCGGACCTCATGAACCCGAAACCTGGGACTCTTCGTCATGCTGTGATCCAAAAGGGACCTCTGTGGATCATCTTCTCTACCAACATGGCCATTAGGCTCACTCAGGAGCTCATCGTGACCAGCGACAAGACCATTGATGCAAGAGGGGCCAATGTTCAGATTGCTTATGGGGCTGGCATTACTCTTCAGTACATCAAAAATGTCATCATCCACGGCCTTCGTATCCATCACATTGTCGTCGGTAGCGGTGGAATGATTCGAGATGCTGTCGACCATGTGGGTTTGAGGACTATGAGCGATGGTGACGGCATTTCCATCTTTGGTTCCTCCAATGTTTGGATTGACCATGTTTCCATGTCCAATTGTCATGATGGTCTCATTGATGCCATTATGGGATCCACTGCCATCACTATATCCAATTGCCACTTCACTCACCATAATGAGGTGATGTTGTTTGGAGCGAGTGACGGGTACTCGAATGATCAGATAATGCAAGTGACTGTAGCATTCAACCACTTTGGTCAAGGATTGGTACAGAGGATGCCAAGGTGTCGATGGGGCTTCTTCCATGTTGTGAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCCAGCATCCCACCATTATCAGCCAGGGAAATCGCTTCATTGCTCCTCCCAATGTATATGCCAAAGAGGTGACAAAGAGAGAGTACTCACCAGAGGAGGTGTGGAAAAGCTGGACATGGAGATCAGAGGGAGACTTGATGATGAATGGAGCATTCTTTGTTACCTCAGGCGATCAAAGCAAGAGAAGACCCTTCTCAAGGATGGATATGATCTCCTATAAACAAGGGACATACGTTACAAGAATGACACGTTTTGCAGGTGCGCTCGCCTGCTTCGTTGGTCGCCCTTGCTAA 3954 43.7 MSTIGFNPLLYHCGKGKHRFHYRPRFNVLKPCSFSYCPNKLLYRGRNSFVNYNSYRLPAFRASTTNAPLLQTFQSMDVFFKETFPLKRNEKLEGRISVRLAQGKEQNQWELTVGCNLAGKWILHWGVSLIDDSGSEWDQPPKEMIPPGSIPIKDYAIETPLKKSSSSSSGDFVHEVKIDLVPDKTIAAINFVLKDEETGIWYQHKGRDFKVPLLDYHGEDGNIVGTKKGLGLWPGALGQLSNLLVKAESNSKDQRSSGESGDAKEEKKYLEGFYEELPIVKEVAVDNSVSVSVRKCPETTKYHLYLETDLPGDVIVHWGACRDETRKWEIPAGPHPPETTVFKNKALRTLLQNENSWLNYEGDDFYIPFSSSGNLPDQQRKSELEDTGVSRKSGEESEGVSVTAYTDGIIKEIRNLVTDISSQKTKKKKTKEAQESILQEIEKLAAEAYSIFRSSTPTFTEEIIETPKPVEPPVQISSGTGSGFEILCQGFNWESHKSGRWYMELKEKAAELSSLGFTVLWLPPPTESVSPEGYMPKDLYNLNSRYGNIDELKDVVKTFHDVGIKVLGDAVLNHRCAHFKNQNGIWNIFGGRLNWDDRAVVSDDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRNDIKEWLCWLRKEIGYDGWRLDFVRGFWGGYVKDYLDASEPYFAVGEYWDSLSYTYGEMDHNQDAHRQRIVDWINATNGTAGAFDVTTKGILHSALDRCEYWRLSDEKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPSGKEMQGYAYILTHPGTPSVFYDHIFSHYKSEVAALISLRKRNKVNCRSVVKIEKAERDVYAATIDEKVAVKIGPGNFEPPSRSSGWSLVIEGKDYKGCPDLTRTFHHPIKMAILRLLLTLSLLATTAFADIGNFDDYWKARAAEAEKAATDAFEPNPENVTNSFNAEVGQVLSGSNSTRRNLKKYTGPCRATNPIDRCWRCDPNWANNRKKLADCVLGFGRKTIGGKLGPYYVVNDSSDSDLMNPKPGTLRHAVIQKGPLWIIFSTNMAIRLTQELIVTSDKTIDARGANVQIAYGAGITLQYIKNVIIHGLRIHHIVVGSGGMIRDAVDHVGLRTMSDGDGISIFGSSNVWIDHVSMSNCHDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDGYSNDQIMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNVYAKEVTKREYSPEEVWKSWTWRSEGDLMMNGAFFVTSGDQSKRRPFSRMDMISYKQGTYVTRMTRFAGALACFVGRPC 1317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4319274 4331729 - Lsi04G004550.1 Lsi04g00455 660504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00455 1317 SMART aamy 485 814 IPR006047 GO:0005975
Lsi04g00455 1317 Pfam Alpha-amylase C-terminal beta-sheet domain 816 871 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lsi04g00455 1317 Gene3D - 967 1310 IPR012334 -
Lsi04g00455 1317 PANTHER ALPHA-AMYLASE 3, CHLOROPLASTIC 82 871 - -
Lsi04g00455 1317 SMART alpha-amyl_c2 815 871 IPR012850 GO:0004556|GO:0005509|GO:0005975
Lsi04g00455 1317 CDD AmyAc_arch_bac_plant_AmyA 486 825 - -
Lsi04g00455 1317 Coils Coil 427 447 - -
Lsi04g00455 1317 PANTHER ALPHA-AMYLASE 82 871 - -
Lsi04g00455 1317 SUPERFAMILY Pectin lyase-like 968 1308 IPR011050 -
Lsi04g00455 1317 MobiDBLite consensus disorder prediction 379 393 - -
Lsi04g00455 1317 Pfam Pectate lyase, N terminus 906 957 IPR007524 GO:0030570
Lsi04g00455 1317 Pfam Alpha amylase, catalytic domain 512 795 IPR006047 GO:0005975
Lsi04g00455 1317 Pfam Pectate lyase 1052 1233 IPR002022 -
Lsi04g00455 1317 Gene3D Glycosidases 485 818 - -
Lsi04g00455 1317 SUPERFAMILY Glycosyl hydrolase domain 819 871 - -
Lsi04g00455 1317 SMART amb_all 1042 1239 IPR002022 -
Lsi04g00455 1317 PRINTS Pollen allergen Amb family signature 990 1007 IPR018082 -
Lsi04g00455 1317 PRINTS Pollen allergen Amb family signature 1050 1066 IPR018082 -
Lsi04g00455 1317 PRINTS Pollen allergen Amb family signature 1258 1282 IPR018082 -
Lsi04g00455 1317 PRINTS Pollen allergen Amb family signature 1216 1235 IPR018082 -
Lsi04g00455 1317 PRINTS Pollen allergen Amb family signature 1014 1039 IPR018082 -
Lsi04g00455 1317 PRINTS Pollen allergen Amb family signature 1288 1311 IPR018082 -
Lsi04g00455 1317 PRINTS Pollen allergen Amb family signature 1114 1135 IPR018082 -
Lsi04g00455 1317 PRINTS Pollen allergen Amb family signature 1194 1213 IPR018082 -
Lsi04g00455 1317 SUPERFAMILY (Trans)glycosidases 486 802 IPR017853 -
Lsi04g00455 1317 Gene3D - 819 871 IPR013780 -
Lsi04g00455 1317 MobiDBLite consensus disorder prediction 371 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00455 Lsi-Chr4:4319274 Lsi08g00746 Lsi-Chr8:15800810 0 dispersed
Lsi04g01565 Lsi-Chr4:23206848 Lsi04g00455 Lsi-Chr4:4319274 3.68E-92 transposed
Lsi07g01004 Lsi-Chr7:14339603 Lsi04g00455 Lsi-Chr4:4319274 3.36E-170 transposed
Lsi02g00312 Lsi-Chr2:2687334 Lsi04g00455 Lsi-Chr4:4319274 0 wgd
Lsi03g01460 Lsi-Chr3:25486590 Lsi04g00455 Lsi-Chr4:4319274 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00455 K01176 - csv:101202976 1632.85