Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00457 ATGGAGGTAATTGCTGAAGATGGGAAAGTTGAGTCTCGGGAAGTGAGGGAATCGAAGGGGAAGAAGAAGCAGAAGTTCAACAAGGAACAAGTTGAAACCGTGGAAGAAGAGACTGGTTGTTGGATTGCTCTGAGGATTTTTCGTAGCTGCATTTCTTCGAGATCCAAAGTTGATAGTTCGATAAGTGGGACTAGTATCAACTATGCTGAAAGCAAGTCTACGGCTGATTCAAGTAGAGACCAACCAACACCTCGAGACATATCTTCAACAACCACAAGTATGAGTAATGCAGAGAGTAATTCATCAACTTCCAAATTAGAAGAGGAACTTAAAATTTCTCCTCATCTACGGAAATTTTCATTCAATGATCTTAAGTTGGCTACAAGGAACTTCAGACCCGAGAGTCTTCTTGGTGAGGGTGGTTTTGGTTGTGTTTTTAAGGGTTGGGTTGAAGAAAATGGAACTGCTCCAGTTAAACCTGGCACAGGACTCACCGTTGCTGTTAAAACCCTCAACCATGATGGTCTTCAGGGCCACAAAGAATGGATGGCTGAAGTGAATTTTCTCAGTGATCTCAAACATCCCAACTTGGTCAGACTTATTGGTTACTGCAATGAAGATGATCAAAGACTGCTTGTATATGAGTTCATGCCTAGAGGAAGCCTGGAGAATCATCTTTTCCGCAGATCTCTACCCCTTCCGTGGTCTATTAGGATGAAAATTGCACTAGGTGCTGCCAAGGGTCTCGCTTTTCTTCATGAGGAAGCAAAAAGACCTGTGATATATCGTGATTTTAAAACATCCAACATCCTATTAGATGCCGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCAAAAGATGGACCCGATGGAGATAAAACCCATGTCTCTACTCGTGTGATGGGAACATATGGCTATGCAGCTCCAGAATACGTTATGACTGGACATCTTACATCAAGGAGTGATGTTTACAGTTTTGGGGTGGTTCTTCTCGAAATGTTAACTGGCAGAAGATCCATGGATAAAAACCGTCCTAATGGTGAACATAACCTTGTTGAATGGGCACGGCCATACCTAGGAGAGAAAAAGAGATTCTATCGCTTGATAGACCCTAGGCTTGAAGGTCATTTCTCAATAAAAGGTGCCCAAAAAGCAGTACAATTAGCTGCTCAATGCCTTAGCCGAGATCAAAAGATCAGACCCTTGATGAGTGAAGTTGTTGAAGCCTTGAAGCCTCTCCCAAACCTCAAGGACATGGCAAGTTCATCTTATTATTTTCAGACAATGCAAGCTGACCGCATAAGATCCAGCCCAATGGCGAGAAATGGCTACCACACAGCGGCTGGACCAGTTCCGAAGAACGGGCAGCAACTACGCAGCTATTCAGTCGCCAATGGTTCTCATGCTTCTCCATATCATCATCAGCAACCTCATCCATCTCCGAAACCCAATGTCAAAGCCTAA 1467 43.49 MEVIAEDGKVESREVRESKGKKKQKFNKEQVETVEEETGCWIALRIFRSCISSRSKVDSSISGTSINYAESKSTADSSRDQPTPRDISSTTTSMSNAESNSSTSKLEEELKISPHLRKFSFNDLKLATRNFRPESLLGEGGFGCVFKGWVEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWMAEVNFLSDLKHPNLVRLIGYCNEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAKRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPDGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPYLGEKKRFYRLIDPRLEGHFSIKGAQKAVQLAAQCLSRDQKIRPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRIRSSPMARNGYHTAAGPVPKNGQQLRSYSVANGSHASPYHHQQPHPSPKPNVKA 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4337978 4342042 - Lsi04G004570.1 Lsi04g00457 660506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00457 488 SMART serkin_6 131 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00457 488 MobiDBLite consensus disorder prediction 441 488 - -
Lsi04g00457 488 Pfam Protein tyrosine and serine/threonine kinase 135 411 IPR001245 GO:0004672|GO:0006468
Lsi04g00457 488 MobiDBLite consensus disorder prediction 69 107 - -
Lsi04g00457 488 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Lsi04g00457 488 CDD STKc_IRAK 137 414 - -
Lsi04g00457 488 ProSiteProfiles Protein kinase domain profile. 131 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00457 488 MobiDBLite consensus disorder prediction 454 475 - -
Lsi04g00457 488 MobiDBLite consensus disorder prediction 69 103 - -
Lsi04g00457 488 ProSitePatterns Protein kinases ATP-binding region signature. 137 169 IPR017441 GO:0005524
Lsi04g00457 488 MobiDBLite consensus disorder prediction 1 28 - -
Lsi04g00457 488 Gene3D Phosphorylase Kinase; domain 1 89 216 - -
Lsi04g00457 488 PANTHER OS01G0588500 PROTEIN-RELATED 62 478 - -
Lsi04g00457 488 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 62 478 - -
Lsi04g00457 488 SUPERFAMILY Protein kinase-like (PK-like) 107 411 IPR011009 -
Lsi04g00457 488 Gene3D Transferase(Phosphotransferase) domain 1 217 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01617 Lsi-Chr1:14549664 Lsi04g00457 Lsi-Chr4:4337978 5.01E-67 dispersed
Lsi04g00457 Lsi-Chr4:4337978 Lsi06g00996 Lsi-Chr6:19976771 7.62E-180 dispersed
Lsi08g00710 Lsi-Chr8:15430953 Lsi04g00457 Lsi-Chr4:4337978 3.74E-108 dispersed
Lsi11g00157 Lsi-Chr11:1698623 Lsi04g00457 Lsi-Chr4:4337978 3.43E-139 dispersed
Lsi04g00709 Lsi-Chr4:6478326 Lsi04g00457 Lsi-Chr4:4337978 2.76E-22 transposed
Lsi08g01004 Lsi-Chr8:18524456 Lsi04g00457 Lsi-Chr4:4337978 3.90E-58 transposed
Lsi02g01498 Lsi-Chr2:20821658 Lsi04g00457 Lsi-Chr4:4337978 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83559 PF07714 PK_Tyr_Ser-Thr 1.20E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00457 - - csv:101203209 926.391