Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00458 ATGAGCCCAGCCCATATTAAATGGCCCATTGGTGCCGTGGTGAGAAATTATGACAGGCCCGGCCACCGATTTCATTATGTCCGGTGCTCCGCCACCACTGGATCTATCCGCCACTTCGCAAACAGAGCTTCTCCGGCTCGATCGCCGATCAGACACTCTGTAGATGCGACAATGAATTTTCTACTCAGATCTACTCATACCGTGCCTCCAGAGCGGCCATCTGTTCAAGAAACTCCTCCTCCAGCTGCCTATTACGCGCCAAAGCCAGCGGTAACTTTGGAAGGTCTGATTTCTGAAGATCCATTTCCACAATATTCCGTTGTTGATGATAATGACGAGGAGGCTGATGCATCTGGCGGTGAAAATGGAAGTATTGCTGGTCATAGGGAGAAAAGCAGCCGTGCTAGTGTGGTGAAGCACACTGATGTTTCCGAGGAAGAAGGGTGGATTACCATTCCATGCAGTGCGTTCTTGTTATATCAGTTCACTAATATACGTGCTCCTCTTTCGCTTCTGTTTGACGAAGGAAATCTAATACTTAATATTCTTCTTCTAGAGGGTCTTCCTTGTGACTGGAAAAATGCATCAGATATACATTCATTATGCAGTTTGGACCGATCTTTCGTACGTATACTTTTTCCATGCCTTGTCTATTTTGTTTTTCATACACGTGCATCATCAGATGAGAGAAATGCCGTGTTACCGGTATGGTACTTTAACTCTGCCCTTTATACAGGTGAACAAATATGTATCTTGGCATGTTTATCTGCTTATAAACAGGATACAGAAACCATAACTCCTTTTAAAGTCGCAGCAGTTATGAGTAAAAATGGAAAATCACATAGTCCTAAAAAACAAAATGAAAACATGGATGATGGAACTAATTCCACAAATGGGGAAAGACATAGTACAGACCAGAATGGTGAAAATCTATTAAGTGAGAAGATTGACCCATCAGAGGATGTTTCTGCTAGTGAATCTCTTCTCAGAATGGAAGATCACAGACGACAAACAGAAACGTTGTTGCAACGATTTGAGAACTCTCACTTTTTTGTAAGAATTGCCGAGTTTAGTGATCCCCTTTGGTCAAAAAAAAGATCTGACAATCAAAGTGACTGTGAGATAGTGGACCAAAACATTGTTAAGTCTAGCATAAATGCAGTCATTGATCAAGGAGACTTTGATTCCGATGTCTCTGGTGGCGTAGCAAGAGGTGCCTTCAAGTGTTGCTCTCTTTCTGATGGAAGCATAGTGACTCCTAGAAGTACTGATATCTTGGTCTTGAAACACACTGTGCACCTGAAGTATGAATTGATTAATTCACAAACTCACTATTCTTGCTTTTCTATCCCAAAGAGTAGAATTTTCTATATCTTTTGTATTGATGTTCAGCTTGGTTATTGTGTGATCAGTGATGCCACCTGTTCAGTAGAAATAAGTACTTGGTTAACTATTTCTTCTGTCAGAATAATGGTTTCTGGTTCGTTTGATATCATCATACTCCTTTTCATACTCCTTTATGCCTATATAAGTTCCCAAGTCTTAATATCAATGTCAATTTCAATTTCAACACTCTTTCTAACTACTGATTCTCATTCTGTGCTTTTACGTGTGAATGTTGGTGTTGACAAATTGAGAGATCCTGTATTGGAAATACTTCAATTTGAGAAGTACCAAGAGCGACCAATATCATTTGAGAATCAGGATGGCTTAGGTTATTCAAATCTGGATCCATGTGGAGAATTGTTGAAATGGTTGCTTCCTCTGGATAACACCATTCCTCCTATTCCCCGCCCTTTATCTCCTCCCCGTTTAATTAGCAATGCAGGAATTGGTGGCACATCTCAGAAGTCTAGTGTTTCTTCTTCATCTGGCTCTCAACTCTTCTCCTTTGGCCATTTTAGAAGCTACTCTATGTCCTCAATACCTCACAATACTGCACCACCTCCTGCACCCGTTAAAGCTGCAAGTTCAAAGCCAAACTTTGAACTTGAAAATTGGGACCAGTTCTCAACCCAGAAGTCCTCAAAGAGTAAAAGAATTGGGGGCCGTGACCTTTTATCTTTTCGAGGTGTCTCTTTAGAGCAAGAGAGATTTTCTGTTTGTTGTGGACTGAAAGGAATTCATATTCCAGGAAGACGGTGGAGGAGAAAACTTGAAATTGTTCATCCTGTCGAAATCCAGTCCTTTGCTGCTGATTGCAATACAGATGACCTTTTATGCGTTCAAATTAAGAATGTGTCTCCAGCTCATATACCGGATATCATAATATATATTGACGCTATAACGATTGTTTTTGAAGAGGCATCAAAGGATGGACTCCCGTCATCATTACCATTAGCTTGCATAGAAGCAGGAAATGAACACAGCTTACCAAATTTAGCCCTCAGGTTGTCATCCACTCAAAATATGTTGTATTCATTAAAGTTCTCATGCTTCATTTATTTTTCTGGTTGTTGTGCTTTTGCTATACCAAACAAGTGGTGGGGTTGCATATCTGAGGGGATGTTTACCCCAGTGAGGGGTAAGTTTTACAATGCATCATTTCGTTATGGACTAAAGAGAGACGAGGAGCACTCTTTTATTCTCAAACCAGCAACTTCTATGTGGAGGAATATAAAGGCTTGTGGAGAAAAAAATTCCCAATCATCCCGATTTCAGGCTGGAAATGCAACATCAAGTTTGTCCCTTACCTCCAAAACTATTGATCAATATGCAATTATGGTAACTTGCCGGTGCAACTATACTGAGTCTAGATTGTTTTTCAAGCAACCAACCAGTTGGCGACCTCGAATTTCAAGGGATCTTATGGTGTCTGTGGCGCTATCAGGGGACACACCTAAACCCAATGGAATTGTTTCTCACCTTCCGGTTCAGGTTTTGACACTTCAGGCGTCAAATTTAACATCTGAAGATCTGACCATGACGGTTCTTGCTCCAGCTTCATCCACTTCTCTTCCATCTGTAATTTCATTGAATTCCTCACCATCATCACCCACGAGTCCATACATGGTTTTAAATGAAGTTGCTGGAAGGATAGGAAGTGAGAAGTATGGTACATCATTGGAAAGGCCAAGATCAATCCCTACTGTATCTGAGAATAAAAAACACAGTGTTGATTTTGGAGGCCGGTCGGTTTCTTTTAAAGAACAATCTTCTCCCATATCAGATATCATCCCAAGTGCTGGTTTAGGTTGCTCGCATTTGTGGCTCCAGAGTAGAGTTCCATTAGGATGTATTCCTTCTCAATCCACAGCTACCATCAAACTTGAGCTACTTCCCTTGACTGATGGCATAATTACTCTTGACACATTACAGATTGATGTCAAGGAAAAAGGGGCATGGCCTATTGTTTATGCTTATGGCCACTCACTATTCTTACATTCAAGTTACACTGATTTGCATACACTTAAGAATATTATGTATAAGCCCAACAAAGGCAGACTGTGCTACGTATATCCCCGAGCACTCACTGAAAATAAATGCGACCTCCAGCATTTCTACAGGGATTATTTAAGAAAAGATGGTTCCTATTCCTAG 3540 40.82 MSPAHIKWPIGAVVRNYDRPGHRFHYVRCSATTGSIRHFANRASPARSPIRHSVDATMNFLLRSTHTVPPERPSVQETPPPAAYYAPKPAVTLEGLISEDPFPQYSVVDDNDEEADASGGENGSIAGHREKSSRASVVKHTDVSEEEGWITIPCSAFLLYQFTNIRAPLSLLFDEGNLILNILLLEGLPCDWKNASDIHSLCSLDRSFVRILFPCLVYFVFHTRASSDERNAVLPVWYFNSALYTGEQICILACLSAYKQDTETITPFKVAAVMSKNGKSHSPKKQNENMDDGTNSTNGERHSTDQNGENLLSEKIDPSEDVSASESLLRMEDHRRQTETLLQRFENSHFFVRIAEFSDPLWSKKRSDNQSDCEIVDQNIVKSSINAVIDQGDFDSDVSGGVARGAFKCCSLSDGSIVTPRSTDILVLKHTVHLKYELINSQTHYSCFSIPKSRIFYIFCIDVQLGYCVISDATCSVEISTWLTISSVRIMVSGSFDIIILLFILLYAYISSQVLISMSISISTLFLTTDSHSVLLRVNVGVDKLRDPVLEILQFEKYQERPISFENQDGLGYSNLDPCGELLKWLLPLDNTIPPIPRPLSPPRLISNAGIGGTSQKSSVSSSSGSQLFSFGHFRSYSMSSIPHNTAPPPAPVKAASSKPNFELENWDQFSTQKSSKSKRIGGRDLLSFRGVSLEQERFSVCCGLKGIHIPGRRWRRKLEIVHPVEIQSFAADCNTDDLLCVQIKNVSPAHIPDIIIYIDAITIVFEEASKDGLPSSLPLACIEAGNEHSLPNLALRLSSTQNMLYSLKFSCFIYFSGCCAFAIPNKWWGCISEGMFTPVRGKFYNASFRYGLKRDEEHSFILKPATSMWRNIKACGEKNSQSSRFQAGNATSSLSLTSKTIDQYAIMVTCRCNYTESRLFFKQPTSWRPRISRDLMVSVALSGDTPKPNGIVSHLPVQVLTLQASNLTSEDLTMTVLAPASSTSLPSVISLNSSPSSPTSPYMVLNEVAGRIGSEKYGTSLERPRSIPTVSENKKHSVDFGGRSVSFKEQSSPISDIIPSAGLGCSHLWLQSRVPLGCIPSQSTATIKLELLPLTDGIITLDTLQIDVKEKGAWPIVYAYGHSLFLHSSYTDLHTLKNIMYKPNKGRLCYVYPRALTENKCDLQHFYRDYLRKDGSYS 1179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4345709 4356448 - Lsi04G004580.1 Lsi04g00458 660507

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00458 1179 MobiDBLite consensus disorder prediction 107 137 - -
Lsi04g00458 1179 PANTHER EXPRESSED PROTEIN 852 1115 - -
Lsi04g00458 1179 PANTHER EXPRESSED PROTEIN 241 799 - -
Lsi04g00458 1179 PANTHER EXPRESSED PROTEIN 852 1115 - -
Lsi04g00458 1179 PANTHER EXPRESSED PROTEIN 58 155 - -
Lsi04g00458 1179 PANTHER EXPRESSED PROTEIN 58 155 - -
Lsi04g00458 1179 PANTHER EXPRESSED PROTEIN 241 799 - -
Lsi04g00458 1179 MobiDBLite consensus disorder prediction 276 324 - -
Lsi04g00458 1179 MobiDBLite consensus disorder prediction 289 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00458 - - - vvi:100255337 619.772
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g849 . . . . . . . . Cmo04g01709 Cmo18g01200 . Cma18g01176 . Car18g01085 Sed06g1562 Cpe09g00152 Cpe01g01443 Bhi07g01606 Tan04g1121 Cmetu10g0451 Lac13g0283 Hepe10g1714 . . Cla05g02472 Cam05g2657 Cec05g2691 Cco05g2726 . Cmu05g2513 Cre05g2628 Cone13ag0982 . Cone6ag0611 . Lsi04g00458 Csa05g02418 . Cme10g00447 . . . . . . . . . . . Cma04g01631 . Car04g01671 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009365 0 1 0 0 1 1 2 1 1 1 1 0 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00458 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.118936 0.074088 0.0