Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00464 ATGAAGGGAGAAGGAAACCAAGGTGGAAAGAAAAGAAGGCTCACAGTGGATCAAGTTCGATTGCTTGAGAAAAATTTTAATGATGAGAAAAAGCTTGAACATGACAGGAAAGTTCAAATTGCTGAGGAGATTGGTTTGCGGCCTCGCCAAGTTGCAGTTTGGTTTCAGAATCGAAGGGCTCGATCCAAAACCAAAAGAATTGAGAGTGATTATGAATCTTTGAATGCTGAATATGATCAGCTTAAGAATGATTTTGACAGTCTTCTCAAGCTGAATCAAGAACTTAAAGCAGAGGTTGATCAACTAAGAGAAAAATGGGTTGCTAGTGAGAAGATGAAGAAACCTTTTGAACCAGTTGGAGTTGAAGGAAATACAAAGACAATGGCTGAAATTTTGTACAAGGTGCAAATAGGGTCATCAAGACTGGAAGAAGGTAGCCGAAGCTCAAGCAAAAGTGATGGTTTTTATTGTGAGAGCCCCACCAGGGAAAACCAATCAAAGTCAGGCAATTTCTTGCAAGATGAAGAAGATGAATTAGGCTACTTGGGGAAACTAGAAGATGAACTTTCTGCTAATGAACTCATGGATTCCTTTAATACTTTCAGTAGTGCAGTTGAAAATCAATCTTTCTGCTTCTGGACTTACTGA 648 39.04 MKGEGNQGGKKRRLTVDQVRLLEKNFNDEKKLEHDRKVQIAEEIGLRPRQVAVWFQNRRARSKTKRIESDYESLNAEYDQLKNDFDSLLKLNQELKAEVDQLREKWVASEKMKKPFEPVGVEGNTKTMAEILYKVQIGSSRLEEGSRSSSKSDGFYCESPTRENQSKSGNFLQDEEDELGYLGKLEDELSANELMDSFNTFSSAVENQSFCFWTY 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4399988 4401268 + Lsi04G004640.1 Lsi04g00464 660513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00464 215 Gene3D - 3 65 - -
Lsi04g00464 215 Coils Coil 57 112 - -
Lsi04g00464 215 ProSiteProfiles 'Homeobox' domain profile. 5 65 IPR001356 GO:0003677
Lsi04g00464 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 196 IPR045224 GO:0003700
Lsi04g00464 215 MobiDBLite consensus disorder prediction 144 168 - -
Lsi04g00464 215 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 9 196 - -
Lsi04g00464 215 Pfam Homeobox associated leucine zipper 65 105 IPR003106 GO:0006355|GO:0043565
Lsi04g00464 215 Gene3D - 66 110 - -
Lsi04g00464 215 MobiDBLite consensus disorder prediction 144 171 - -
Lsi04g00464 215 SMART HOX_1 8 69 IPR001356 GO:0003677
Lsi04g00464 215 ProSitePatterns 'Homeobox' domain signature. 40 63 IPR017970 GO:0000981|GO:0006355
Lsi04g00464 215 PRINTS Lambda-repressor HTH signature 36 45 IPR000047 GO:0003677
Lsi04g00464 215 PRINTS Lambda-repressor HTH signature 45 61 IPR000047 GO:0003677
Lsi04g00464 215 Pfam Homeodomain 10 63 IPR001356 GO:0003677
Lsi04g00464 215 SUPERFAMILY Homeodomain-like 9 76 IPR009057 -
Lsi04g00464 215 CDD homeodomain 10 66 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00464 - - K09338 csv:101204430 332.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00464 Lsi-Chr4:4399988 Lsi04g02252 Lsi-Chr4:29557379 1.89E-29 dispersed
Lsi02g00316 Lsi-Chr2:2714297 Lsi04g00464 Lsi-Chr4:4399988 5.99E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g846 . Blo16g01135 . Bda11g01236 Bpe13g00467 . . . . . . . . . Sed04g0677 . . Bhi07g01613 Tan04g1126 Cmetu10g1215 Lac13g0276 Hepe10g1711 . . Cla05g02477 Cam05g2661 Cec05g2695 Cco05g2730 Clacu05g2663 Cmu05g2517 Cre05g2632 . . Cone6ag0614 Cone9ag0617 Lsi04g00464 Csa05g02414 Chy10g00972 Cme10g00452 . . . Bda11g01236 . . Bma01g00080 Bma06g00658 . . . . . Car04g01668 Car15g00313 Cpe13g00941 . . . . . . . . . . . . . . . . . Chy09g00265 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013330 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 0 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25139 PF00046 Homeodomain 6.20E-16 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00464 Lsi_Chr04 FPKM 26.474855 27.858688 13.086867 13.261057 9.507702 9.718909 9.455447 1.644596 1.750013 1.442973