Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00470 ATGGGTCGCAAGAGAGATAAACCCTACCCTTCCTCCCACCTTCCTACCTCCGGCGCTAAGAGACGACGCCCTCCGCCGCCCGCACCGTCGCATACGGAGGACGAGGATATGGACAAGCCCTTGTCGAAGCCTGCGCCACCGCTTGCCCTAGTCATCGTTGACCTACCTTCACACTGTTCGGTGCTTGACTTGAAGTCCCGATTTGAGATCTACGGATCCATCTCCCGAATCCGAATCGACCGTGATTGTGTTGGCTACATCACTTATCGCACTAAAGACTCCGCTGATGCTGCCATGGCCGCCGCCCTTGATCCCTCCTTCGCCTTCACCATTGATTCCAAAAAGGTTCAGGTACTATGGGCGAATGATCCTCAAGTCCAATGGCGACAAGGGATTAACGTTGGTGTTAACAAAAATAAGGAATTGTCTTCAAAGCTCTTGCGGGCAGAAGTGCCACTGAGCAGACATGGAAGAGGCAATAAGCTTGCTTCAACCATTGTCAACTCCAGAAAAAGCAACAGTTCTTCAAGGTCGGATGTGCCTTTCAGCGGCAGGGAAGTTGTTGCTTACGATGATCTTCTCTAA 585 51.79 MGRKRDKPYPSSHLPTSGAKRRRPPPPAPSHTEDEDMDKPLSKPAPPLALVIVDLPSHCSVLDLKSRFEIYGSISRIRIDRDCVGYITYRTKDSADAAMAAALDPSFAFTIDSKKVQVLWANDPQVQWRQGINVGVNKNKELSSKLLRAEVPLSRHGRGNKLASTIVNSRKSNSSSRSDVPFSGREVVAYDDLL 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4413536 4414442 + Lsi04G004700.1 Lsi04g00470 660519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00470 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 101 IPR000504 GO:0003723
Lsi04g00470 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 123 IPR000504 GO:0003723
Lsi04g00470 194 MobiDBLite consensus disorder prediction 26 41 - -
Lsi04g00470 194 Gene3D - 26 178 IPR012677 -
Lsi04g00470 194 SUPERFAMILY RNA-binding domain, RBD 24 133 IPR035979 GO:0003676
Lsi04g00470 194 MobiDBLite consensus disorder prediction 1 43 - -
Lsi04g00470 194 MobiDBLite consensus disorder prediction 162 181 - -
Lsi04g00470 194 SMART rrm1_1 49 119 IPR000504 GO:0003723
Lsi04g00470 194 CDD RRM_SF 50 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00470 - - - bhj:120081339 342.813
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g844 . . . . . . . . Cmo04g01704 . . . . . . . Cpe01g01438 Bhi07g01617 . . Lac13g0273 Hepe10g1709 . . Cla05g02480 Cam05g2664 Cec05g2698 Cco05g2733 Clacu05g2666 Cmu05g2520 Cre05g2635 . Cone19ag0975 . . Lsi04g00470 Csa05g02409 Chy10g00970 Cme10g00456 Blo06g00894 . . . . . . . . . . Cma04g01626 . Car04g01667 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013480 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00470 Lsi_Chr04 FPKM 81.928673 90.039581 55.487614 56.570339 43.722549 47.671204 43.409691 71.143974 75.972816 70.62413