Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00471 ATGGAAGACAACGTCGAGCAAGAGATATGGAGTTGGGGGGCAGGAACCGACGCCCAGCTCGGCACCGGGCGACTCGAGGACGACAATCTCCCTCAACTCCTCCGAACACCGACACTCTCCTCCGTCCCCGCCATCTCATCCCTGTCCTGCGGCGGCGCTCATGTCATCGCTTTGACTGCCGGTATCCGATCCTCCTCCACCATAAAAGGTTTAAGCTTTATGAATTTGATAGTGACTCAAAACCCGGATTCGAATTCCTGTGGTGGGGTGCTTACATGGGGAAGAGGCAATTCAGGGCAGTTAGGGCTAGGAGACATGGCAAGCAGCTTAAACCCTAAGCCAGTGATGGGGTTGGGAAGCTACTTCATAACCCACATTTCTGCAGGCTGGAGCCATTCTGGTTTTGTTTCAGATAAGGGAAAGCTTTATACTTGTGGAGATGGCTCATTTGGGCAGTTAGGGCATGGAGATTACCAGTCACGTTGCTTCCCTGATGAGGTCCTGTTTTTCTCTGATAAACATGTTGATCAGATTGCATGTGGGATGCGCCACTCTCTTGCATTGGTGAAAGGTTGTTCTGGTGAACAAGTTTATGGATTTGGAGCTGGGAAACGAGGTCAATTGGGTATCTCCAAGAAGATTCAGAATATTAATCTTCCCATACTTTCTTCCGAATTGGAAGCTGCTGAAATAGTTGGCGTAGCTGCTGGTGGAGATCACAGTGCTGCTCTATCCGTTGAGGGAGAACTTTATATGCTTGGTGGAAAACATCACGGAGCGCTGAGTGATTCTGAAATGCTAAATGCGACAATGTCTCTGCCTGGTGATTCTGAGGAAGATAACTTCCGACCAGTCCCTGCTCTTAGTGGAATAAAGGTCTTGGATATTGCAGCCGGAGCCGAGCATTCTGCAATCATTACAGGCATGGTTTTGCAAAAGGATGGAGCTGTAAAGACTTGGGGTTGGGGGGAGCATGGTCAGCTGGGTTTGGGAGATACATGTGACCACACCAATCCACAAACGGTGAATCTTAACCTCAAACTTGAGAGTACTGCTTTTGATGTCAAAGTCTATTGTGGCAGTGGCTTTACAGTGGCTGTTGCAACATCCCATGCTGCTTCAAATCTCCCCAATTGA 1137 48.81 MEDNVEQEIWSWGAGTDAQLGTGRLEDDNLPQLLRTPTLSSVPAISSLSCGGAHVIALTAGIRSSSTIKGLSFMNLIVTQNPDSNSCGGVLTWGRGNSGQLGLGDMASSLNPKPVMGLGSYFITHISAGWSHSGFVSDKGKLYTCGDGSFGQLGHGDYQSRCFPDEVLFFSDKHVDQIACGMRHSLALVKGCSGEQVYGFGAGKRGQLGISKKIQNINLPILSSELEAAEIVGVAAGGDHSAALSVEGELYMLGGKHHGALSDSEMLNATMSLPGDSEEDNFRPVPALSGIKVLDIAAGAEHSAIITGMVLQKDGAVKTWGWGEHGQLGLGDTCDHTNPQTVNLNLKLESTAFDVKVYCGSGFTVAVATSHAASNLPN 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4415272 4420175 + Lsi04G004710.1 Lsi04g00471 660520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00471 378 PRINTS Chromosome condensation regulator RCC1 signature 88 104 IPR000408 -
Lsi04g00471 378 PRINTS Chromosome condensation regulator RCC1 signature 126 142 IPR000408 -
Lsi04g00471 378 PRINTS Chromosome condensation regulator RCC1 signature 9 25 IPR000408 -
Lsi04g00471 378 PRINTS Chromosome condensation regulator RCC1 signature 237 255 IPR000408 -
Lsi04g00471 378 PRINTS Chromosome condensation regulator RCC1 signature 142 156 IPR000408 -
Lsi04g00471 378 PRINTS Chromosome condensation regulator RCC1 signature 310 331 IPR000408 -
Lsi04g00471 378 Gene3D - 4 270 IPR009091 -
Lsi04g00471 378 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 7 61 IPR000408 -
Lsi04g00471 378 PANTHER OS01G0777800 PROTEIN 86 360 - -
Lsi04g00471 378 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 248 309 IPR000408 -
Lsi04g00471 378 Gene3D - 271 373 IPR009091 -
Lsi04g00471 378 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 88 139 IPR000408 -
Lsi04g00471 378 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 140 191 IPR000408 -
Lsi04g00471 378 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 178 188 IPR000408 -
Lsi04g00471 378 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 234 244 IPR000408 -
Lsi04g00471 378 SUPERFAMILY RCC1/BLIP-II 7 370 IPR009091 -
Lsi04g00471 378 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 61 - -
Lsi04g00471 378 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 86 360 - -
Lsi04g00471 378 Pfam Regulator of chromosome condensation (RCC1) repeat 8 58 IPR000408 -
Lsi04g00471 378 Pfam Regulator of chromosome condensation (RCC1) repeat 314 367 IPR000408 -
Lsi04g00471 378 Pfam Regulator of chromosome condensation (RCC1) repeat 88 135 IPR000408 -
Lsi04g00471 378 Pfam Regulator of chromosome condensation (RCC1) repeat 196 244 IPR000408 -
Lsi04g00471 378 Pfam Regulator of chromosome condensation (RCC1) repeat 139 188 IPR000408 -
Lsi04g00471 378 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 195 247 IPR000408 -
Lsi04g00471 378 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 370 IPR000408 -
Lsi04g00471 378 PANTHER OS01G0777800 PROTEIN 9 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00471 - - - csv:101206976 593.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00471 Lsi-Chr4:4415272 Lsi11g00988 Lsi-Chr11:16469723 1.23E-31 dispersed
Lsi04g00471 Lsi-Chr4:4415272 Lsi06g00572 Lsi-Chr6:7446725 5.77E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g843 . . . . . . Bma14g01622 . . Cmo18g01205 . Cma18g01183 . Car18g01091 . Cpe09g00147 . Bhi07g01619 . . . . . . Cla05g02481 Cam05g2665 Cec05g2699 Cco05g2734 Clacu05g2667 Cmu05g2521 Cre05g2636 Cone13ag0985 . . . Lsi04g00471 Csa05g02408 Chy10g00969 Cme10g00457 . Blo11g00760 Bda07g01457 . Bpe11g01629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008999 1 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00471 Lsi_Chr04 FPKM 0.791091 0.335064 0.0 0.0 0.0 0.0 0.0 1.746113 1.872156 1.759504