Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00474 ATGCTTGTCTTCACCAACGCCTTTCCCACTTCTTATTTCTTCTTCTCAACCGAGTTTGGATGTTTGAACCCTTCTGTATTACCCTCCATTGCTTTTGTTCCTAACTCGAGAAGCGGATGGAGTTCGCATCATATGGCTGCGACGGAAAGGAGGTGTGCGCTTTTGACTTCCAAGGGTATGCTCTTTGGTTGTTCTGGGTTTGTGACGAGGTGTAAAGATTTGGATAGAGAAGGGGATTTCGCATTGGAGGCGGAGATATTGGAGTTTATGAAAAGTTCAAGAAACCCAGAAGCGTTTCCGAGTAAGAAAGACCTGATTGAAGCCGGCAGGGAGGATTTGGTGGATGCTATTGTCAAGAAAGGTGGTTGGCTTTGTCTTGGATGGAATTTGGACGAAGAAGAATATGGGGGTCTTGGACAATTCTGTCTCGATGAACGGGAATCTATCTTGGCTACTGATTGGGATAGTTTAAAGTGTGATGAAAGACAGAGATTTACGACGCCTCTTTCTTCCAATGCTTTTTCATCTACATCATCTTCATTCACCGGTAGATCACTAGAAACTGTTGCTGAGCATGAGTCTGGGATTGAGGGTATGCTGAGTCGATTAGAAAAAGAAAGAAATGCGACCTTCGGAGCTGGAAAAAATGATTTGCAACCTGACACAACAGCAAAAGAGGGTTCTTCTCCTGTACAAGTTAACGGTCTTGGATGTTCTGTTAGTCCTGAGGTGCAGAGAACTTGGAGCACATTCAGGACAGATCTTCAAGATGAAGATTTTGAAGCTTCTGAAATTGTTTTGAGCGAGGGAAGGAGCGGGGAAGTATCAGATGTTCTGAGATATGAAACACTAGGATATAGAGGGGATCCTACCAATTCAAACTCTAGCGAGAAAGAAATGAATCACAGTCAACTACGACGTCACCTTCAGAACATGGAGTTGGAGCTCTCTTCCGTAATCGGCTCATTAAGATCTAATGCATTTGTGACTGAGAAGGGTCAAAGTAAATCTTCTGATGATTTGCTGGAGCTTTCAGATGCTTTTGAGTTTCAAGAAAATGAGATCCTAAATGCCAAGGACAAGCTACGGTCTATACGAGCAAAGATAGCCGTGGTAGAAGGAAAGATGGCACTGACAATTATTGATGCACAAAAGGTGGTTGAGGAGAAACAAAAGAGGATCAATTGTGCTCGCAGAGCTTTGCAACTTCTTCGTACTGCTTGCGTGGTTTGGCCTAATTCTGCATCAGAGGTTCTCTTAGTAGGATCATTTGATGGTTGGTCAACCCAGTTGCTTGCTCTCAACCTGCAGAGGAAGATGGAAAGGTCCAGTACGGGGGTTTTCTCCTTGTTCCTAAAGCTATATCCTGGAAAATACGAGATTAAATTCATTGTTGATGGCCAATGGAAGATCGATCCTTTACGCCCAATTGTTAACACCAGTGGATATGAAAATAATCTACTGATTATCACGTAG 1476 43.22 MLVFTNAFPTSYFFFSTEFGCLNPSVLPSIAFVPNSRSGWSSHHMAATERRCALLTSKGMLFGCSGFVTRCKDLDREGDFALEAEILEFMKSSRNPEAFPSKKDLIEAGREDLVDAIVKKGGWLCLGWNLDEEEYGGLGQFCLDERESILATDWDSLKCDERQRFTTPLSSNAFSSTSSSFTGRSLETVAEHESGIEGMLSRLEKERNATFGAGKNDLQPDTTAKEGSSPVQVNGLGCSVSPEVQRTWSTFRTDLQDEDFEASEIVLSEGRSGEVSDVLRYETLGYRGDPTNSNSSEKEMNHSQLRRHLQNMELELSSVIGSLRSNAFVTEKGQSKSSDDLLELSDAFEFQENEILNAKDKLRSIRAKIAVVEGKMALTIIDAQKVVEEKQKRINCARRALQLLRTACVVWPNSASEVLLVGSFDGWSTQLLALNLQRKMERSSTGVFSLFLKLYPGKYEIKFIVDGQWKIDPLRPIVNTSGYENNLLIIT 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4420350 4424141 - Lsi04G004740.1 Lsi04g00474 660523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00474 491 Gene3D Immunoglobulins 404 491 IPR013783 -
Lsi04g00474 491 Pfam Glycogen recognition site of AMP-activated protein kinase 409 490 IPR032640 -
Lsi04g00474 491 Coils Coil 380 407 - -
Lsi04g00474 491 CDD E_set_AMPKbeta_like_N 409 490 - -
Lsi04g00474 491 PANTHER PROTEIN PTST HOMOLOG 2, CHLOROPLASTIC 236 491 - -
Lsi04g00474 491 Coils Coil 341 368 - -
Lsi04g00474 491 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 15 222 - -
Lsi04g00474 491 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 236 491 - -
Lsi04g00474 491 PANTHER PROTEIN PTST HOMOLOG 2, CHLOROPLASTIC 15 222 - -
Lsi04g00474 491 SUPERFAMILY E set domains 406 489 IPR014756 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00474 - - - csv:101204677 800.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01303 Lsi-Chr1:11307372 Lsi04g00474 Lsi-Chr4:4420350 7.33E-12 dispersed
Lsi04g00474 Lsi-Chr4:4420350 Lsi05g00330 Lsi-Chr5:4218219 2.28E-12 dispersed
Lsi04g00474 Lsi-Chr4:4420350 Lsi04g00476 Lsi-Chr4:4427240 3.98E-24 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g842 Blo01g00414 Blo16g01136 Bda01g02250 . Bpe13g00468 . . . Cmo04g01703 Cmo18g01206 . Cma18g01184 . Car18g01092 Sed06g1567 Cpe09g00146 Cpe01g01437 Bhi07g01622 Tan04g1129 Cmetu10g0993 Lac13g0272 Hepe10g1707 . . Cla05g02482 Cam05g2666 Cec05g2700 Cco05g2735 Clacu05g2668 Cmu05g2522 Cre05g2637 . . Cone6ag0616 Cone9ag0618 Lsi04g00474 Csa05g02407 Chy10g00968 Cme10g00458 . . . . . . Bma01g00079 Bma06g00657 . . . Cma04g01625 . Car04g01666 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005107 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00474 Lsi_Chr04 FPKM 5.079531 5.820899 1.494176 1.231986 20.428432 16.469431 20.280275 0.599742 0.315142 0.367067