Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00480 ATGGCGGCTGCCGCTCCCTCTGATGTCTCCGATGGACCAGTCCTCAGCCTCATCAACAAGCGTCTCCGCGCCCTTCGTAAGAAACTCAATCGTATCCTTCAGATGGAAGAGGCTATTTCTCAGGGAAAACCCATCAACAAGGAGCAAGAAGAAGTCCTTCGCTCTAAGCCTTCTGTCACCGCCCTCATCGATGAGCTTGAAAAGCTTCGCCAACCGCTGTCATCGGCTGTCTCTGAGGAAATCAACTTGGCTGTTCAACGCCAACAGGCTAGTGTCTCCTCTCAACCCGTGTCAACCGATGATTCGCCTACAGAGGTTAGGGATGAAAAGACGAGTGATGAGAAAGACCAGTCCGAACACGCTGTGGTTGAGGACCTTCTAAACCTCCTCTATTTTGGCTCTTTGTTTGACGTCAAGTCTCAAAGCGATTTCACTTCGACGATGCTTACAAGAACGCACGAGAGAAGTTGCTGCATCACCTACGATTATGTCACTGACGATGCTACCGATCTTCTCGCCGAGAGGGATTTGGATTTGATATCGACGATGAGCGGCCTATTGGTCTCTCGTCCCGTAGATTCGAATTTGCCTCATAAGAATGCGTTGGAGCGTTGCATCGAGCACGCTAAACTCTGGCTCACGAAGGCTGACCAGCCTATTGAACCCAACACGGATGTTACTTATGCGAACTTGAGAGAGAGGCTGCACAAGATCATGGCATCTGATTATTTCACTACCACGCCTGAGATAAAAGGTCCTGTTGAAGTAGCTGCTGTTGCTGCAGGAAGCTATGCCAATTTTCAGGTTCCGGTGGCTGTCCATGAAGAAGATTCAGATGAAAAGTTTCAACAGACGATACATTGGCAACTATCGTGGGAGTTTCTTGGAAAAAGAAAAACTTCTAGAAGGCGACCTTTCAAAGACTTTGGAGAAAGTTCCTACGTAAAAAACTTGAGGGAAGATGACTTACCTTTGAAGCTTTGCAGTGGACACCCTTCTTACAGATTTACTTACCCAGAGCTCCATGACAAGATGACCTTCCCTAAGGACACGAATAGCCTTACACATGATTTTTGCAGATTTGGATCCTTTGATTTGAAAGATATTGTTAAAGAGGATGTTGACGCGGGAGACTTGCAAGGAGATGATATCAGTGATGGTCAACCTGGTTCTGCTGACGAGCTGCCTAGTGATGTGCAAGAGACTGGAAATTCTTCTGAATTCGTCACACAGCAAGAAGTGAGACCAGAAGAAGAATTTGAGCAGAAACATGCAGACGGAGATGCAAAAGAACAGCAGTATGTTCCTCGAAGGGGGGGATATATGAACCAAAGAGGCGGGCGTGGTGTCGGTGGCCGAAGAGGATATTCTAATGGTCGTGGAGGTCGAGGTGATGGAAGAGGAGGAGGATCCTACCAGAATGGACGCACTCGATATTATGACCAGTCGGGAAACTATTATCAGAGGAACTACTACAATGGTCGAGGAAGAGGAGGTGGTCGGGGTGGTGGTGGCCACTCTTACACCAGTCATGGTTCCTCCCAAGGTGCTCCTAACTCTGCAAGTATTGGAGTGGCTTCGTGA 1584 48.04 MAAAAPSDVSDGPVLSLINKRLRALRKKLNRILQMEEAISQGKPINKEQEEVLRSKPSVTALIDELEKLRQPLSSAVSEEINLAVQRQQASVSSQPVSTDDSPTEVRDEKTSDEKDQSEHAVVEDLLNLLYFGSLFDVKSQSDFTSTMLTRTHERSCCITYDYVTDDATDLLAERDLDLISTMSGLLVSRPVDSNLPHKNALERCIEHAKLWLTKADQPIEPNTDVTYANLRERLHKIMASDYFTTTPEIKGPVEVAAVAAGSYANFQVPVAVHEEDSDEKFQQTIHWQLSWEFLGKRKTSRRRPFKDFGESSYVKNLREDDLPLKLCSGHPSYRFTYPELHDKMTFPKDTNSLTHDFCRFGSFDLKDIVKEDVDAGDLQGDDISDGQPGSADELPSDVQETGNSSEFVTQQEVRPEEEFEQKHADGDAKEQQYVPRRGGYMNQRGGRGVGGRRGYSNGRGGRGDGRGGGSYQNGRTRYYDQSGNYYQRNYYNGRGRGGGRGGGGHSYTSHGSSQGAPNSASIGVAS 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4469681 4475369 + Lsi04G004800.1 Lsi04g00480 660529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00480 527 MobiDBLite consensus disorder prediction 412 433 - -
Lsi04g00480 527 MobiDBLite consensus disorder prediction 507 527 - -
Lsi04g00480 527 MobiDBLite consensus disorder prediction 87 101 - -
Lsi04g00480 527 MobiDBLite consensus disorder prediction 102 118 - -
Lsi04g00480 527 MobiDBLite consensus disorder prediction 395 411 - -
Lsi04g00480 527 MobiDBLite consensus disorder prediction 87 118 - -
Lsi04g00480 527 PANTHER GLYCINE-RICH PROTEIN 1 519 - -
Lsi04g00480 527 MobiDBLite consensus disorder prediction 475 490 - -
Lsi04g00480 527 MobiDBLite consensus disorder prediction 377 527 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00480 - - - csv:101205164 630.943
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g839 . . . . . Bpe10g00853 . . Cmo04g01701 Cmo18g01207 . Cma18g01186 . Car18g01094 Sed06g1574 Cpe09g00143 Cpe01g01435 Bhi07g01631 Tan04g1132 Cmetu10g1288 . . . . Cla05g02484 Cam05g2668 Cec05g2702 Cco05g2737 Clacu05g2670 Cmu05g2524 Cre05g2639 . . Cone8ag0623 Cone12ag0607 Lsi04g00480 Csa05g02402 Chy10g00964 Cme10g00462 Blo06g00893 . . . . . . . . . . Cma04g01623 . Car04g01664 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009367 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00480 Lsi_Chr04 FPKM 19.216387 21.816725 61.64999 62.820698 51.006664 48.848976 54.989574 101.886147 102.675171 114.791725