Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00487 ATGCCTTCTCCATCTCCTTCTTTTACTGTTTCCGCCATTGTTGTCTTCTTCCTTTACCTCTCTCCTCTCTTTCGTGTTGAGTCTTTGAGCTCTTCTTGTCCACCTTTCTCTTCCCAACTTCGTTTCCCTTTTTCCTCTGTTTCTGGTCATGGCCATCCTTCTTTTCAGGTGCGTTGCTCTTCTCCCCACTCTGTTATATCCATTAATGGCCTTTCTTTTTCTCTGTTGAGTTTCAATATCACCTCCACCACTCTCCTTCTTTCCCCTCTTCCACTAAATGTCACTCCCACTCTCAAAGAATCCAACCACACTTGTTTTTCTCTTCGTTCCTCCTCTATTCCCAGCCGTTCGATCAATTTCTCTGGCTCCCCGTTTCGAATCTCAGATGGGTATTGTTCTAGACTCTCTCTTCTTCGCCCCTGTTCCCCTCCGCATCTACCCAATTGCAGCCATTGTCCTTGGGAGTGTAATCTCATCAAGAAACCGGTTAATTTGCTCCATGGATGCGGCGTCGAGCGTCAGTCTGTGTCGGAGCAAGGTTGTCAGGAGGAGGTCTTGGAGTATTTGGACAGAATTCTTAGATTGGGGTTTGAAGTGGAGTGGGATAAAGATCAGGACCCGTACTTTATGAAATGTAATGATTGTGAAGCTAAAAAAGGTGTTTGTGGCTTCAATTCTTCAGACCCAGATAGGCAATTCATTTGCTATTATACTCGAACTCGATACTCATACCCTAGTAGAATCGCGATTTTGTCCTCTGTTTTCGCGTTGATGTGCTTGTTATTGGTTATTGCGGTAATGTTGGCTTTTTTCAGGTCGAGATGGTTGAGATCCCTCGCCATTGAAGTAGACCCAACAGCTCAGTTCCTTAGTCGTCATCGTTCACCTAATCTTCTCCCACCAGTTTTCCCCTACGAAGAACTCGAATCCTCAACTAATCGATTCGACCCAAAGAGAAAACTGGGCGACGGTGGATTTGGGTCTGTTTATTTGGGTCAGCTCAACGATGGTCGATTGGTGGCCGTCAAGTATCTTCACAAGCACCATGCCGCCGCCACCGCCTCCTCCGGCAAGGCTTTCTTCACCAAATCGTTCTGTAACGAAATCTTGATTCTTTCTTCAATTAATCACCCAAATCTCGTTAGGTTACATGGGTATTGTAGTGATCCAAGAGGGCTTATTCTAGTCTATGATTATGTCCCAAATGGGACACTCGCCGACCATCTCCATGGCCCTAAATGCTCGTACCGGAAGGGATCTCTGTCCTGGCAAGTAAGGATTGACATTGCTCTGCAAATCGCCATGGCTATGGAGTATTTGCATTTCTCTGTGGTGCCGCCGATTGTTCACAGAGATATTACCTCTTCCAATATTTTTGTGGAGAAAGATATGAGAATCAAAGTTGGGGATTTTGGGCTTTCAAGGTTGTTGGTTTTCTCAGATACGACGTCGTCTTCATCTGGGTATGTATGCACCGGACCTCAGGGGACACCCGGTTACTTGGATCCGGATTACCACCGGTCCTTCCGGTTGACGGAGAAGAGTGACGTTTACAGCTTCGGAGTGGTGTTATTGGAGCTGATCTCTGGTCTCAAAGCTGTGGATCAGAGTCGAGAGAGAAGAGAAATGGCGCTGGCGGATCTGGTAGTGTCCAAGATCCAGATGGGTCAGCTTCATCAGGTGGTGGACTCTGTTTTGGGTGTCGACGGCGAGGTAATCGACGGCGTTGAGGCCGTGGCGGAGTTGGCTTTCCGATGCGTTGCGGCGGACAAAGACGACCGCCCTGACGCCAAGGAGATCGTGGAGGAACTCCGGCGAATTCGGAACGGCGCACGTGGAGGGGTCCGGTCGTCGATTTCAAACGGAAGTGCTGACGTGGCTAGAAGTTGA 1890 48.2 MPSPSPSFTVSAIVVFFLYLSPLFRVESLSSSCPPFSSQLRFPFSSVSGHGHPSFQVRCSSPHSVISINGLSFSLLSFNITSTTLLLSPLPLNVTPTLKESNHTCFSLRSSSIPSRSINFSGSPFRISDGYCSRLSLLRPCSPPHLPNCSHCPWECNLIKKPVNLLHGCGVERQSVSEQGCQEEVLEYLDRILRLGFEVEWDKDQDPYFMKCNDCEAKKGVCGFNSSDPDRQFICYYTRTRYSYPSRIAILSSVFALMCLLLVIAVMLAFFRSRWLRSLAIEVDPTAQFLSRHRSPNLLPPVFPYEELESSTNRFDPKRKLGDGGFGSVYLGQLNDGRLVAVKYLHKHHAAATASSGKAFFTKSFCNEILILSSINHPNLVRLHGYCSDPRGLILVYDYVPNGTLADHLHGPKCSYRKGSLSWQVRIDIALQIAMAMEYLHFSVVPPIVHRDITSSNIFVEKDMRIKVGDFGLSRLLVFSDTTSSSSGYVCTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLKAVDQSRERREMALADLVVSKIQMGQLHQVVDSVLGVDGEVIDGVEAVAELAFRCVAADKDDRPDAKEIVEELRRIRNGARGGVRSSISNGSADVARS 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4513122 4515011 + Lsi04G004870.1 Lsi04g00487 660536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00487 629 Pfam Protein kinase domain 317 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00487 629 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.5 23 613 - -
Lsi04g00487 629 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 613 IPR045274 GO:0007166
Lsi04g00487 629 CDD STKc_IRAK 321 607 - -
Lsi04g00487 629 ProSitePatterns Tyrosine protein kinases specific active-site signature. 448 460 IPR008266 GO:0004672|GO:0006468
Lsi04g00487 629 ProSiteProfiles Protein kinase domain profile. 315 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00487 629 Gene3D Phosphorylase Kinase; domain 1 290 399 - -
Lsi04g00487 629 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Lsi04g00487 629 Gene3D Transferase(Phosphotransferase) domain 1 400 619 - -
Lsi04g00487 629 SUPERFAMILY Protein kinase-like (PK-like) 295 604 IPR011009 -
Lsi04g00487 629 Pfam Wall-associated receptor kinase C-terminal 178 238 IPR032872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00487 Lsi-Chr4:4513122 Lsi08g01427 Lsi-Chr8:22501332 7.73E-78 dispersed
Lsi04g00487 Lsi-Chr4:4513122 Lsi06g01317 Lsi-Chr6:23754335 8.68E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83560 PF00069 Pkinase 5.50E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00487 - - csv:101206111 1168.3