Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00493 ATGGATCGTCTTAACCTGCAATGGATTGCTGTTATGATCTCCATTATGAGCCTTTCTGAAGCTTGCCATCCTGCAGATTGGAAAGGTCTAACCAGTTTCAAGTCTGGAATTTTCCTTGACACTTCTGGTAGGCTTGCAAAATGGGTGGGACGAAACTGTTGTGATTGGGAAGGAATTTCTTGTCACAACATTACAGGCAGAGTCAAAGAAATCAATTTGCCAGGCTTCATATCAACTGGTGATCTCCCCTTTCAGTCTGAGATGAGAGGCTTTCTTTCACCTTCAATAACACTGCTTAATGCTGTTGAGATTATTAATCTTGGAGGACTGCTTGGCCTTGGTGGAACGATCCCTTCGTTTATTGGTTTACGCCTTTGCAACCTGCGAAAGCTCTATCTTTATGGCAACAAGTTGAGAGGTCCACTTCCAGAAAGTGTAGGTAAGCTTCTGAAACTTGAAGAACTTGCTGTGCATGATAATAGGCTGTCTGGTTCACTTCCAGCATGTCTTGGCAGTCTCAAGACTCTCCATAGCCTTCTTCTCTATGGAAATCGGTTTTCGGGTGCAATACCGGATTCATTTGCAGATCTTACTAACTTAGTTCAGATGGATTTACACAGCAACTCATTGGTTGGTCACATACCTGATAGAATTGGTCAGTTGCAGATGTTGAAAGAGCTTGATCTTTCAAACAACTTCTTGAGCGGGAGAATTCCCCTTTCCTTCAACAATTTGACAGGTCTTTCAGTTTTGTATCTGGATAATAACAATCTGGAGGGACCAATGCCATTCGCATCGGTTTCTGGTCAAATCTCTTCTTCTCTTGCTTTTCTTAGACTGAATGACAACCGTTTAAGTGGTGCTATCCCTTCTAGTTTTGGAGAGCTTGTCTTTCTCAAAAGAGCTTCACTTTCAAACAACAAACTTGAGGGAACAATTCCTTCTTCTTTAGGAAGGTTATCATCTTTGTCAGAGTTGTATCTCGACCGAAACCGATTCTCCAGCCGAATACCGGAATCATTTGGACACCTCTCTCAGCTCATTCTCCTGAATCTCTCTCACAATTCCATCAAAGGGCCATTGCCTGAGATGTCATCTCTTCGAAATATTCAAACCATTGATCTTTCTTACAACCTTCTGAACATGTCCTCCATTCCCCAGTGGCTATCAAAACTACCATCTCTTTCAAAAATCTATCTTGCAGGGTGTGGAATCCATGGCCAAATTCCTGAGTTCTTGAGAACAACTCCAAGTCCAATACAGGAACTAGATCTTTCCCTCAATCATCTTACTGGGAAAATTCCAGAATGGATTGGAAGCCTCACTCAGCTCTATTCACTAAAACTATCAGAAAACTTACTAGTCTCTGAGATTCCCAATTCCATTACAAATTTACAGGACTTGGGTGTGCTCGATCTTCATTCAAACAAGTTAACAGGCAATATACAACAAATCTTCAAGATAGGACACAGATTTCCAGACGATTCTTTAACATACATTGATGTTTCAGACAATAATTTCTCTGGGGACTTTGATCAAACAGATGTCGGGCAACAACCTGCGATCCAGTTTCTGAATTTGTCGCATAACAATCTGAAAGGAAGATTGCCCACTTCAATCGGAGCATTAAGATCAATACGAAGCCTGGATTTGAGCCGTAACAATTTGGGCTTCGACTTGCCAGAGGCCATAGTGAATGCAAACCAATTAGAGACGCTGAAGCTGCAAAGAAACCATTTTACAGGAAAAATACCAAAAGGGTTTCTGAAGATGCGGAAGTTAAAGGAATTGGATCTGTCGAATAATTTGTTAGTGGGAGAAATTCCAGCAGGAAAGCCGCTGAGTGATTTTCCTCGAAGCGCTTACATTGGTAACAAAGGTTTGTGTGGAAAGCCTTTAAGCCCATGTAAGCTTTGA 1917 41.58 MDRLNLQWIAVMISIMSLSEACHPADWKGLTSFKSGIFLDTSGRLAKWVGRNCCDWEGISCHNITGRVKEINLPGFISTGDLPFQSEMRGFLSPSITLLNAVEIINLGGLLGLGGTIPSFIGLRLCNLRKLYLYGNKLRGPLPESVGKLLKLEELAVHDNRLSGSLPACLGSLKTLHSLLLYGNRFSGAIPDSFADLTNLVQMDLHSNSLVGHIPDRIGQLQMLKELDLSNNFLSGRIPLSFNNLTGLSVLYLDNNNLEGPMPFASVSGQISSSLAFLRLNDNRLSGAIPSSFGELVFLKRASLSNNKLEGTIPSSLGRLSSLSELYLDRNRFSSRIPESFGHLSQLILLNLSHNSIKGPLPEMSSLRNIQTIDLSYNLLNMSSIPQWLSKLPSLSKIYLAGCGIHGQIPEFLRTTPSPIQELDLSLNHLTGKIPEWIGSLTQLYSLKLSENLLVSEIPNSITNLQDLGVLDLHSNKLTGNIQQIFKIGHRFPDDSLTYIDVSDNNFSGDFDQTDVGQQPAIQFLNLSHNNLKGRLPTSIGALRSIRSLDLSRNNLGFDLPEAIVNANQLETLKLQRNHFTGKIPKGFLKMRKLKELDLSNNLLVGEIPAGKPLSDFPRSAYIGNKGLCGKPLSPCKL 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4540822 4542738 + Lsi04G004920.1 Lsi04g00493 660542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00493 638 PRINTS Leucine-rich repeat signature 543 556 - -
Lsi04g00493 638 PRINTS Leucine-rich repeat signature 224 237 - -
Lsi04g00493 638 Pfam Leucine rich repeat 175 232 IPR001611 GO:0005515
Lsi04g00493 638 Pfam Leucine rich repeat 496 556 IPR001611 GO:0005515
Lsi04g00493 638 Pfam Leucine rich repeat 420 478 IPR001611 GO:0005515
Lsi04g00493 638 Pfam Leucine rich repeat 322 380 IPR001611 GO:0005515
Lsi04g00493 638 Pfam Leucine Rich Repeat 593 609 IPR001611 GO:0005515
Lsi04g00493 638 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
Lsi04g00493 638 SUPERFAMILY L domain-like 272 484 - -
Lsi04g00493 638 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 637 - -
Lsi04g00493 638 SUPERFAMILY L domain-like 22 264 - -
Lsi04g00493 638 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 8 637 - -
Lsi04g00493 638 SMART LRR_typ_2 543 567 IPR003591 -
Lsi04g00493 638 SMART LRR_typ_2 591 613 IPR003591 -
Lsi04g00493 638 SMART LRR_typ_2 125 148 IPR003591 -
Lsi04g00493 638 SMART LRR_typ_2 320 343 IPR003591 -
Lsi04g00493 638 SMART LRR_typ_2 149 173 IPR003591 -
Lsi04g00493 638 SMART LRR_typ_2 367 392 IPR003591 -
Lsi04g00493 638 SMART LRR_typ_2 197 221 IPR003591 -
Lsi04g00493 638 SMART LRR_typ_2 245 274 IPR003591 -
Lsi04g00493 638 SMART LRR_typ_2 441 465 IPR003591 -
Lsi04g00493 638 Gene3D Ribonuclease Inhibitor 87 367 IPR032675 -
Lsi04g00493 638 Gene3D Ribonuclease Inhibitor 20 86 IPR032675 -
Lsi04g00493 638 Gene3D Ribonuclease Inhibitor 368 638 IPR032675 -
Lsi04g00493 638 SUPERFAMILY L domain-like 421 636 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00493 - - - csv:101207954 1103.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00627 Lsi-Chr1:5050475 Lsi04g00493 Lsi-Chr4:4540822 3.45E-124 dispersed
Lsi04g00493 Lsi-Chr4:4540822 Lsi04g00776 Lsi-Chr4:7268267 9.37E-86 dispersed
Lsi10g01044 Lsi-Chr10:14662312 Lsi04g00493 Lsi-Chr4:4540822 2.84E-30 dispersed
Lsi04g00493 Lsi-Chr4:4540822 Lsi01g00847 Lsi-Chr1:6791970 8.14E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g818 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02493 Cam05g2678 Cec05g2712 Cco05g2747 Clacu05g2680 Cmu05g2535 Cre05g2650 . . . . Lsi04g00493 Csa05g02392 Chy10g00954 Cme10g00472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014248 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00493 Lsi_Chr04 FPKM 4.844444 6.669003 6.805257 6.94315 9.494182 10.347404 9.742856 7.399948 6.590795 6.511995