Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00494 ATGAGTGGATGGGATAGGGTTAGACCATCGAGTTCGAGATTTGGCCGCGGTAATTCTGCAATGCACGAGAGGACCACCTCTACTACAACGGTTCGACTTGGCCGAGTCCAGCCGCAGGCCCCTGGACATCGCACCATCTTCTGCAATGATCGCGACGCTAATCTTCTTGTCAAATTCAAGGGGAATTCAGTTTCGACAACTAAGTACAACTTCTTCACTTTCTTTCCGAAAGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACCATCTCAATCTTATCCACCACACCCATCAGTCCTGTGCATCCAATTACAAATGTGGTCCCTTTAAGTCTGGTTCTACTCGTCTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTGCTGCAAGATCAAAAGTGGGAGAGCGTTCCTTGGAAAAGGTTGCAAGTTGGAGACATTGTTAGGACTGCTAACCTGGATGGGGAGACAAATTTGAAGATTAGGAAAGCCTTGGAAAAGACCTGGGATTACCTGACTCCAGAGAAGGCATCTGAATTCAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACAGGCAATGTTATTATTCAGAAGCAAACATTACCTCTAAGCCCAAACCAACTTTTATTGCGAGGATGCAGTCTCAGGAACACTGAGTATATCGTTGGGGCTGTTATTTTTACTGGCCATGAAACAAAGAAGGACATAAACAATAGAGTTCTTGAGGAAACACACGAGGATTTGGAATGTGTATGA 828 43.6 MSGWDRVRPSSSRFGRGNSAMHERTTSTTTVRLGRVQPQAPGHRTIFCNDRDANLLVKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKRLQVGDIVRTANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKKDINNRVLEETHEDLECV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4565326 4571269 + Lsi04G004940.1 Lsi04g00494 660543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00494 275 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 26 167 - -
Lsi04g00494 275 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 166 263 - -
Lsi04g00494 275 Pfam Phospholipid-translocating ATPase N-terminal 46 110 IPR032631 -
Lsi04g00494 275 MobiDBLite consensus disorder prediction 12 29 - -
Lsi04g00494 275 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 166 263 - -
Lsi04g00494 275 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 26 167 - -
Lsi04g00494 275 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 249 IPR023298 -
Lsi04g00494 275 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00494 Lsi-Chr4:4565326 Lsi09g01091 Lsi-Chr9:17328856 2.64E-55 dispersed
Lsi04g00494 Lsi-Chr4:4565326 Lsi02g00155 Lsi-Chr2:1273764 1.18E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00494 K14802 - csv:101207069 496.508