Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00495 ATGCAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACTCTGGAAAAGAAACTCGACAAACTTATACTTACACTATTTGCTACTCTCTTTATGATGTGTTTGATTGGAGCCATCGGCAGTGGCGTGTTTGTAAACCAAAAGTACTACTACTTAGCTCTTGATAAGGGAGGTGAAAACCAATTCAACCCTCGCAATCGATTCCTGGTTGTCATTCTGACCATGTTTACCCTCATTACTCTGTACTCGACAATCATTCCTATTTCCCTTTATGTTTCCATTGAGATGATCAAATTTATTCAATCGACACAATATATCAATAAGGATCTAAATATGTTCCATGCTGATAGCAATACCCCTGCATTGGCCAGAACTTCCAATCTGAACGAAGAACTTGGACAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATTGGTGGAGAGGTTTATGGCACTGGTATCACTGAAATAGAGAGGGGAATTGCTGAGCAGAATGGCTTGAAAGTGGATGAGGCCCACAAATCAGCCAATGCCGTTCAAGAAAAGGGATTTAACTTCGATGATGCAAGGCTTATGAGAGGAGCATGGAGAAATGAGCCCAACTCTGATCTTTGTAAGGAATTTTTCAGATGCCTTGCTATTTGTCATACTGTACTTCCTGAGGGTGACGAATCCCCTGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCCTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACAACAATATATGTTCGTGAATCTCATGTTGAGAAGATGGGTAAAATCCAAGATGTTTCTTATGAAATTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTGGTGTGTCGTTATTCTGATGGCAGGCTTGTTCTGTACTGCAAGGGTGCTGATACCGTAGTATATGAGAGATTGGCTGGTGGAAATGATGATCTGAAGAATGTAACTAGGGAACACTTGGAGAAATTTGGATCTTCCGGTCTGAGAACCCTATGCCTTGCTTACAGAGATTTGCATCCTGACGTGTATGAAAGCTGGAATGAGAAATTTATTCAAGCTAAGTCTTCATTAAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTCTTAGAGAAAGACCTTATCTTGATTGGCTCTACTGCTATAGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACACTTTCTAGAGCTGGTATCAAGATTTGGGTGCTGACAGGAGACAAGATGGAAACTGCTATTAATATAGCTTATGGTAGTTCAGAAACTGATGCAATCAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAACTTGCACGTTTTATTCGAGAAGAAGTAAAAAAGGAACTGAAGAAATGTCTTGAGGAAGCGCAGCAATGTTTGCATTCTGTCTCTCCACCCAAATTAGCACTCGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCGAGTCTGCGAGTTACTTTACTAAACTTGAGCTTGAATTGTACTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCGCAGGTGACAAGTCTGGTGAAGAAAGGTGCACAGAAAATAACTCTTAGTATTGGTGATGGTGCTAATGATGTTAGCATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAAGGAATGCAAGCAGTGATGGCTAGTGATTTTGCTATTGCTCAGTTTCGCTTTCTCACAGATTTACTTCTTGTGCATGGGCGATGGTCATATCTTAGAATATGCAAGGTTGTCACTTACTTCTTTTACAAGAATCTTACGTTCACTTTAACTCAGTTTTGGTTTACCTTCCAAACTGGATTTTCTGGCCAAAGATTCTACGATGATTGGTTCCAGTCGTTGTATAATGTCATATTCACTGCCCTACCTGTAATAATTGTTGGGCTATTTGACAAGGATGTCAGTGCTTCCCTTTCCAAAAAGTACCCTGAGCTCTACAGAGAGGGAATAAGAAATGTGTTTTTCAAGTGGAGAGTTGTGACAACTTGGGCTTTCTTTTCCATTTACCAATCTTTAGTCTTTTATTATTTTGTAACCGCTTCTAGTTCCAGCAGTCAATCGTCATCTGGCAAGGTGTTTGGTCTGTGGGATATCAGCACGATGACTTTCACATGCATTGTCGTGACTGTGAATTTGCGGCTGCTTATGATCTGCAATTCAATTACCCGGTGGCATTACATTACGGTTGGGGGGAGCATTTTAGCATGGTTCCTATTTATTTTCTTATATTCCGGTATTATGACACCCCATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCTTAATGAGTACATTATACTTTTACGTAGCTGTAATCCTTGTCCCCGTTGTTGCACTTCTCTGTGATTTCGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTACGATTATCAGATAGTACAAGAAATACATAGACATGAACCTGAAGGTAGAGGTACAGCGGGATTACTGGACATTCAGAACCATCTTACACCGGAAGAGGCAAGAAGCTATGCCATGGCTCAACTCCCTCGAGAATTATCGAGGCACACTGGCTTTGCTTTCGACTCACCTGGCTATGAGTCATTTTTTGCTGCACAGCTTGGTATTTATGCCCCACAGAAGGCATGGGATGTTGCTAGGAGAGCCAGTGTGAAGTCGAGACCTAAGATTAGGGAAAAGAAGTAA 2799 40.98 MQVMMNAMNVPSKRSTLEKKLDKLILTLFATLFMMCLIGAIGSGVFVNQKYYYLALDKGGENQFNPRNRFLVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGTGITEIERGIAEQNGLKVDEAHKSANAVQEKGFNFDDARLMRGAWRNEPNSDLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKIQDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVVYERLAGGNDDLKNVTREHLEKFGSSGLRTLCLAYRDLHPDVYESWNEKFIQAKSSLRDREKKLDEVAELLEKDLILIGSTAIEDKLQEGVPNCIQTLSRAGIKIWVLTGDKMETAINIAYGSSETDAIREVENRGDQVELARFIREEVKKELKKCLEEAQQCLHSVSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCTSVVCCRVSPLQKAQVTSLVKKGAQKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSKKYPELYREGIRNVFFKWRVVTTWAFFSIYQSLVFYYFVTASSSSSQSSSGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFLFIFLYSGIMTPHDRQENVYFVIYVLMSTLYFYVAVILVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPEGRGTAGLLDIQNHLTPEEARSYAMAQLPRELSRHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRPKIREKK 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4582608 4591534 + Lsi04G004950.1 Lsi04g00495 660544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00495 932 Coils Coil 383 403 - -
Lsi04g00495 932 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 533 639 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi04g00495 932 SUPERFAMILY Calcium ATPase, transmembrane domain M 10 838 IPR023298 -
Lsi04g00495 932 CDD P-type_ATPase_APLT_Dnf-like 3 720 - -
Lsi04g00495 932 ProSitePatterns E1-E2 ATPases phosphorylation site. 143 149 IPR018303 -
Lsi04g00495 932 Pfam Cation transport ATPase (P-type) 239 333 - -
Lsi04g00495 932 Pfam Phospholipid-translocating P-type ATPase C-terminal 588 838 IPR032630 -
Lsi04g00495 932 PRINTS P-type cation-transporting ATPase superfamily signature 560 579 - -
Lsi04g00495 932 PRINTS P-type cation-transporting ATPase superfamily signature 141 155 - -
Lsi04g00495 932 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 206 411 IPR023299 GO:0000166
Lsi04g00495 932 Gene3D - 406 600 IPR023214 -
Lsi04g00495 932 Gene3D - 252 405 IPR023299 GO:0000166
Lsi04g00495 932 SUPERFAMILY HAD-like 136 616 IPR036412 -
Lsi04g00495 932 SFLD p-type atpase 123 611 IPR044492 -
Lsi04g00495 932 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 3 927 - -
Lsi04g00495 932 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 3 927 - -
Lsi04g00495 932 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 2 846 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Lsi04g00495 932 SFLD Haloacid Dehalogenase 123 611 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00495 Lsi-Chr4:4582608 Lsi09g01091 Lsi-Chr9:17328856 0 dispersed
Lsi04g00495 Lsi-Chr4:4582608 Lsi04g00308 Lsi-Chr4:3125165 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00495 K14802 - csv:101207069 1771.13