Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00498 ATGCCGTCTCATGCGGATCTGGACCGTCAGATCGAGCATCTGATGGAGTGTAAGTCGTTGCCGGAAGCGGAGGTGAAAATACTTTGCGATCAGGCGAGAGCGATTCTGGTCGAGGAGTGGAACGTGCAGCCGGTTAAGTGTCCGGTGACGGTTTGCGGTGATATTCATGGCCAATTTTACGATCTCATTGAACTGTTTCGGATAGGAGGCCGTACTCCCGATACTAATTACCTTTTCATGGGCGATTACGTGGATCGTGGTTACTACTCAGTCGAGACCGTTACTCTTCTAGTGGCTCTAAAAGTTCGTTACAGAGACAGAATTACCATCTTGAGGGGTAATCACGAGAGCCGACAAATAACTCAAGTGTATGGTTTTTATGATGAATGCCTGAGAAAATATGGAAATGCCAATGTCTGGAAACACTTCACCGATCTTTTCGATTACCTCCCTCTTACAGCTCTAGTTGAGAGTCAGGTTTTCTGTTTACATGGAGGACTTTCTCCATCCTTGGATACCTTAGATAACATTCGCTCATTGGACCGTATACAGGAGGTCCCCCATGAGGGGCCAATGTGTGATCTCTTATGGTCTGATCCAGACGACCGGTGTGGATGGGGAATATCTCCACGTGGAGCTGGTTATACATTTGGTCAGGATATAGCTGCTCAGTTCAATCATACAAATGGGCTCTCTCTTATATCCAGAGCTCATCAACTTGTCATGGAAGGATACAACTGGTGTCAGGATAAGAATGTGGTGACTGTCTTTAGCGCTCCGAATTATTGTTATCGATGTGGAAATATGGCCGCAATTCTGGAAATTGGGGAAAATATGGATCAAAATTTTCTACAATTTGACCCAGCTCCTCGGCAAATTGAACCTGATACCACACGCAAGACTCCTGATTATTTTTTGTGA 921 45.39 MPSHADLDRQIEHLMECKSLPEAEVKILCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGRTPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALVESQVFCLHGGLSPSLDTLDNIRSLDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4602573 4605760 + Lsi04G004980.1 Lsi04g00498 660547

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00498 306 SUPERFAMILY Metallo-dependent phosphatases 6 293 IPR029052 -
Lsi04g00498 306 Gene3D - 2 306 IPR029052 -
Lsi04g00498 306 CDD MPP_PP2A_PP4_PP6 6 290 - -
Lsi04g00498 306 PRINTS Serine/threonine phosphatase family signature 230 250 IPR006186 GO:0016787
Lsi04g00498 306 PRINTS Serine/threonine phosphatase family signature 252 268 IPR006186 GO:0016787
Lsi04g00498 306 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Lsi04g00498 306 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Lsi04g00498 306 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Lsi04g00498 306 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Lsi04g00498 306 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Lsi04g00498 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 306 - -
Lsi04g00498 306 SMART pp2a_7 20 290 IPR006186 GO:0016787
Lsi04g00498 306 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
Lsi04g00498 306 Pfam Calcineurin-like phosphoesterase 48 239 IPR004843 GO:0016787
Lsi04g00498 306 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00498 K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit [EC:3.1.3.16] - csv:101207312 643.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00498 Lsi-Chr4:4602573 Lsi08g00759 Lsi-Chr8:15946531 0 dispersed
Lsi04g00498 Lsi-Chr4:4602573 Lsi04g00914 Lsi-Chr4:9207219 1.90E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g809 Blo01g00410 Blo16g01139 Bda01g02171 Bda11g01245 Bpe13g00474 . . . Cmo04g01688 . . . . . Sed08g1883 . Cpe01g01424 Bhi07g01649 Tan04g1154 Cmetu10g0911 Lac13g0253 Hepe10g1691 . . Cla05g02498 Cam05g2682 Cec05g2715 Cco05g2750 Clacu05g2685 Cmu05g2539 Cre05g2654 . Cone19ag0992 Cone8ag0631 Cone12ag0613 Lsi04g00498 Csa05g02387 Chy10g00950 Cme10g00475 . . . Bda11g01245 . . Bma01g00073 . . . . Cma04g01610 . Car04g01652 . . Cpe07g00610 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000292 4 4 4 4 5 4 7 4 4 4 4 4 7 4 4 6 4 11 7 4 3 4 4 4 4 4 4 11 3 5 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00498 Lsi_Chr04 FPKM 6.766503 9.053531 16.542376 17.012726 9.550075 8.626715 9.242891 17.59267 18.967997 18.68745