Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00499 ATGTTGATGTACGGCTGGATGGTGATGGACTATGATACGGGATGCACCTGCGCACCACCACAGTATTCTCCACACCAACAGAAGACTCGGAAAATGAACGGGTCTCGCACGTGCTCGCTCTGTGGGAACAATGGCCACAACTCCCGCACGTGCCCGGAAGGAGACGGCGGCGGCGGCTTCATGTTGTTCGGAGTTAGAGTGACGACGGAGGGAAGTAACTCGTTTAGGAAGAGCGTTAGTATGAATAATCTTTCACAATACGACCACCCTCAAAGTCAAGACTCCAACAACGCCGATGCCGGATATGCTTCGGACGACGTCGTTCACCCATCTGACCGTTGCGGCGGCCGGAAGAGAGGGATTCCGTGGACGGAGGAAGAGCATAGGCTGTTTTTGTTGGGATTACAGAAGGTTGGGAAAGGAGATTGGAGAGGGATTTCGAGGAATTTTGTGAAAACGCGTACGCCAACTCAGGTTGCAAGTCATGCTCAGAAATACTTTCTCCGACGGAATAATTTCAATCGGAGACGCCGTAGATCCAGCCTTTTCGATATCACTACTCACACCTTCACGAGCTCATCCATGCAAGACGATTTGATATTTTCCGGCCAGGAGGCTATGCCGCCACAGCTGCCACCGTCACAGCCGCAAAAAGACAACAATCCGGGAAATTTCTCGGTGAAAATTCATTCAGCGAAACCACCTCCTGCCGCCGTAGCCGGCGGCGCCGAAGATAGCAACGCCGTGGAGAGTGCACTAACATTACGTTCATCAAATTCTCAGGCAAAGACTTGCAGTTCCAAAATTAGTCGTCCAATACCAATGCTTCCTCCATCTCCATACTCAAAATTTGCTGAATTGAACATTAACGAAAGAACGCCGCCAGAAGACACTTTGCCTCTAACTTTGAAGCTCTCAACTCCACACTCGGAGGGACAGTCACCGGCGGCGGCTTCACAGTCGTCCGGCAGTTTCCAGACAATGTCCGGCGGCGGAGACAGCATAGACATTGTCAATTTGATTTTGGTGAGAAAGAACGAAAAGAGAGAGACGCTAACGTCGGAAGCAGAAATGTGTTGGAAATTTTCGTTGCTTCCTTTTCTTCTCCTTCTCTTCAGCTTCTCTGCTTCACTTCATGCCCAATTGCAGAATACAGACAGAGTTGGAAGAAACGAAGAAATCGAGATAGGGTTTGGGCGCAGAGCTCTGTTGAGTTTCAAAGAGACTCCACAGGGAAGTAACGTTACCTTTGAATGCTCTCGTTCTGGCCCCTGCGTTGCCTGCCTCTACTCCGAAAAGAATGATGAAAAATATCGCTGCAGTGAGACTGGCTACCGTATTCCCCTGAAATGCGTGGAAATCAAAGACACTTCAAAAGTTTCCAATGGGAAAAAATCTCATGATGGTCGCTCAATGCTTGAAATATCTTATGAGCACAAGCTTGTGATCCCTGATGATGCCAGTGGTCATGCTTCATCAACTGCACACAGAAATCTAAGAGATGGTTCTGGCTCAGCAACAGATGGTTCTCAGGCTTACATCACTTATAGAAGCTGTATACCATCAGTTAGTGAAGAAAAGTTGTCTGTAGTTGGTTTTGAGGTGATAGCTAATATCATGTCTGAGCATTGTGCTATGCATGCTGCTCGTAAGCGGTTCGGTTGTATACTTCAGAAGGAAGCGAACTGTTTCAACGGCTGGTTTTGCTTCTGGCAGGGTGCAATCAAATTCCAGGTTCTAGTTCAGTCAGGAGTCTTCTTTTGTTACAAATGTTCATGCGACGTAAATATGAATCAACAACTAGGCATTGAATGGTTGCACATACTTCTCTCCCTGTTCTATTTATTTCAAAACAAAATCTACATCTGGTGTCTTGACATTTTAGTCATCAATTCAACTGCTTGTAATTTCGTTGCTTTCTTTTGGTTATCGAAA 1935 46.87 MLMYGWMVMDYDTGCTCAPPQYSPHQQKTRKMNGSRTCSLCGNNGHNSRTCPEGDGGGGFMLFGVRVTTEGSNSFRKSVSMNNLSQYDHPQSQDSNNADAGYASDDVVHPSDRCGGRKRGIPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRNNFNRRRRRSSLFDITTHTFTSSSMQDDLIFSGQEAMPPQLPPSQPQKDNNPGNFSVKIHSAKPPPAAVAGGAEDSNAVESALTLRSSNSQAKTCSSKISRPIPMLPPSPYSKFAELNINERTPPEDTLPLTLKLSTPHSEGQSPAAASQSSGSFQTMSGGGDSIDIVNLILVRKNEKRETLTSEAEMCWKFSLLPFLLLLFSFSASLHAQLQNTDRVGRNEEIEIGFGRRALLSFKETPQGSNVTFECSRSGPCVACLYSEKNDEKYRCSETGYRIPLKCVEIKDTSKVSNGKKSHDGRSMLEISYEHKLVIPDDASGHASSTAHRNLRDGSGSATDGSQAYITYRSCIPSVSEEKLSVVGFEVIANIMSEHCAMHAARKRFGCILQKEANCFNGWFCFWQGAIKFQVLVQSGVFFCYKCSCDVNMNQQLGIEWLHILLSLFYLFQNKIYIWCLDILVINSTACNFVAFFWLSK 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4605769 4615799 - Lsi04G004990.1 Lsi04g00499 660548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00499 645 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 52 335 - -
Lsi04g00499 645 MobiDBLite consensus disorder prediction 303 330 - -
Lsi04g00499 645 ProSiteProfiles Zinc finger CCHC-type profile. 38 53 IPR001878 GO:0003676|GO:0008270
Lsi04g00499 645 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 171 IPR017930 -
Lsi04g00499 645 CDD SANT 122 166 IPR001005 -
Lsi04g00499 645 ProSiteProfiles Myb-like domain profile. 122 167 IPR001005 -
Lsi04g00499 645 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Lsi04g00499 645 MobiDBLite consensus disorder prediction 85 100 - -
Lsi04g00499 645 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Lsi04g00499 645 Gene3D - 121 173 - -
Lsi04g00499 645 MobiDBLite consensus disorder prediction 250 268 - -
Lsi04g00499 645 MobiDBLite consensus disorder prediction 487 507 - -
Lsi04g00499 645 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Lsi04g00499 645 MobiDBLite consensus disorder prediction 85 120 - -
Lsi04g00499 645 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 118 169 IPR006447 GO:0003677
Lsi04g00499 645 SMART sant 119 169 IPR001005 -
Lsi04g00499 645 MobiDBLite consensus disorder prediction 292 330 - -
Lsi04g00499 645 PANTHER KIN2 52 335 - -
Lsi04g00499 645 MobiDBLite consensus disorder prediction 204 274 - -
Lsi04g00499 645 MobiDBLite consensus disorder prediction 491 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00499 - - - csv:101207806 489.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00499 Lsi-Chr4:4605769 Lsi07g01281 Lsi-Chr7:18676948 5.41E-51 dispersed
Lsi02g02990 Lsi-Chr2:35987132 Lsi04g00499 Lsi-Chr4:4605769 3.23E-37 transposed
Lsi07g00124 Lsi-Chr7:1402809 Lsi04g00499 Lsi-Chr4:4605769 7.73E-37 transposed
Lsi02g00340 Lsi-Chr2:2890868 Lsi04g00499 Lsi-Chr4:4605769 2.64E-42 wgd
Lsi04g00499 Lsi-Chr4:4605769 Lsi06g01508 Lsi-Chr6:25512275 3.17E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g808 . . . . . Bpe10g00815 . Bma15g00209 Cmo04g01687 . . . . . Sed06g1590 . Cpe01g01423 Bhi07g01650 Tan04g1155 Cmetu10g0001 Lac13g0252 Hepe10g1690 . . Cla05g02499 Cam05g2683 Cec05g2716 Cco05g2751 Clacu05g2686 Cmu05g2540 Cre05g2655 Cone13ag1001 Cone19ag0993 . . Lsi04g00499 Csa05g02386 . Cme10g00476 Blo06g00857 . . . . . . . . . . Cma04g01609 . Car04g01651 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007688 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25140 PF00249 Myb_DNA-binding 4.80E-10 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00499 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.05895 3.535607 2.789124