Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00501 ATGGATTGGGAACAGCAGCGGCGGAAAAGGAAGCGTTTTGGGAGGTCTAGCTCGCATGTACAGTTCTTTACTCGAAGATCTCTGTTTCTTTGCATCTCTTTCTTTGCTTTTCTCTTGTTTCTCTCATCGAGTCGGTGGTTCTCGATTGCGGCGGCGTCTTTCCGGCCAGTTCTCGATGCTTCTTCCACCACTCTTTCCCGGTTGTCCACCTCTGCCAGCAAGTCTACACTTGACAATTCTTTGACCAGTAAGTATTCGCCTTTGAGAATCGAAAGCCGTGTCCTGTTTCCAGACCATTTGCTTTTAATGGTCACCGGCGAATTGGGCCGAGATGAGAAATTGGATTGTTTATACCACAAATCTGTCGCTAGAGGTTTGAACCATGAAACTCTCAAACAGTCAGTTCTGTCCACGGACAAGTACGATGAGTTCCGATCGATTGCCAGATGTCCACTACCGCCACTGAATTACTCAGCCTCCGCCGTGGACTTGAGAAGGGGCGGCGTGGAAGCTGATGACCATTGGTTGGTCAGAAATAGGCACCCAGTTGCCTCATGGGAGAGGGTAGTTTATGAGGCAGCTATTGACGGTGATACGGTTGTGGTGTTTGCCAAGGGACTAAATCTCCGACCACACAAGGAATCAAATCCAGCTGAATTCAGCTGCCACTTTAGACTGGGGAATTCCAACAATAACGGAGAATATGTGCTTACCACAAAAGCAGTAACTGCAGCTCAAGAAATTATCAGGTGCTCCTTGCCGGCTGGTGTGCTGAGCAGTTTAGACAAGGAAAAGGGAATTCGAGTTACAGTGAGCCGCGGCAGTATCAATACTAAAACCCATCTTCAGGTGACTCTGCCCTCAGTGGCCAGACTTTTCAACTCGAAGCTGAATGACCTGCAAAGAAATCAGGCAAAACATGAGCTTTGTGTGTGCACAATGGTGTGGAACCAAGCGGCAGCACTTCGTGAGTGGATTATGTACCATGCCTGGCTTGGAGTTGGGCGCTGGTTCATCTACGACAACAATAGTGATGATAACATTGAAGAAGTCATTAGAGAGCTCAACCTGGAAGATTACAATATCAGTAGGTTGGCCTGGCCATGGCTTAAAACCCAAGAAGCTGGTTTCTCACACTGTGCTTTGAGAGCTAGAGATGAATGCAAGTGGGTTGGTTTCTTTGATGTTGACGAGTTCTTCTACTTCCCTTCAAAGTATCGCCATCAGCGAGAATACCATACTGCTGGCCGCAATGCGCTCCATTCTCTCATTGCCGAGTCATCTGCTTCAACTTCCAATTCAACGGCCATTGCAGAAATTAGAACAGCCTGCCATAGCTTTGGACCATCGGGTTTAACTTCACATCCACCACAGGGAGTAACAATGGGGTACACTTGCCGGCTCCAGAGTCCTGAGAGACACAAATCGTTTGTCCGGCCAGACTTGCTTGACACGACACTTCTCAATATCGTTCACCACTTTAGGTTGAAACGAGGATTTGGGTTCTTTGACGTACCAAAAAGCAATGCTGTCATAAACCATTACAAGTACCAAGTGTGGGAAACTTTTCGAGCTAAATTTTTCAGAAGAGTAGCTACCTATGTTGTTGATTGGCAGGAGGCACAGAATGAAGGGTCGAAGGATAGAGCACCAGGGCTTGGAACGGAGGCAATTGAACCACCTAATTGGAGGTTACAGTTCTGTGAAGTTTGGGACACTGGACTGAGAGATTTTGTCCAGACTTTGTTCTCTGATCCTTTGACAGGGTACCTACCGTGGGAGAAAGCTTCTGGTTAA 1797 47.36 MDWEQQRRKRKRFGRSSSHVQFFTRRSLFLCISFFAFLLFLSSSRWFSIAAASFRPVLDASSTTLSRLSTSASKSTLDNSLTSKYSPLRIESRVLFPDHLLLMVTGELGRDEKLDCLYHKSVARGLNHETLKQSVLSTDKYDEFRSIARCPLPPLNYSASAVDLRRGGVEADDHWLVRNRHPVASWERVVYEAAIDGDTVVVFAKGLNLRPHKESNPAEFSCHFRLGNSNNNGEYVLTTKAVTAAQEIIRCSLPAGVLSSLDKEKGIRVTVSRGSINTKTHLQVTLPSVARLFNSKLNDLQRNQAKHELCVCTMVWNQAAALREWIMYHAWLGVGRWFIYDNNSDDNIEEVIRELNLEDYNISRLAWPWLKTQEAGFSHCALRARDECKWVGFFDVDEFFYFPSKYRHQREYHTAGRNALHSLIAESSASTSNSTAIAEIRTACHSFGPSGLTSHPPQGVTMGYTCRLQSPERHKSFVRPDLLDTTLLNIVHHFRLKRGFGFFDVPKSNAVINHYKYQVWETFRAKFFRRVATYVVDWQEAQNEGSKDRAPGLGTEAIEPPNWRLQFCEVWDTGLRDFVQTLFSDPLTGYLPWEKASG 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4627968 4629764 - Lsi04G005010.1 Lsi04g00501 660550

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00501 598 PANTHER GLYCOSYLTRANSFERASE FAMILY 92 PROTEIN RCOM_0530710 5 596 - -
Lsi04g00501 598 Pfam Glycosyltransferase family 92 307 560 IPR008166 -
Lsi04g00501 598 PANTHER UNCHARACTERIZED 5 596 - -
Lsi04g00501 598 SUPERFAMILY Nucleotide-diphospho-sugar transferases 307 412 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00501 - - - csv:101208293 1131.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00501 Lsi-Chr4:4627968 Lsi08g00779 Lsi-Chr8:16180307 4.66E-98 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g804 . . . . . . . . Cmo04g01685 . . . . . Sed08g1846 . Cpe01g01421 Bhi07g01654 Tan04g1160 Cmetu03g0226 Lac13g0249 . . . Cla05g02502 Cam05g2686 Cec05g2719 Cco05g2754 Clacu05g2689 Cmu05g2543 Cre05g2658 Cone13ag1004 Cone19ag0998 . . Lsi04g00501 Csa05g02383 Chy10g00947 Cme10g00479 . . . . Bpe11g01748 . . . . . . Cma04g01605 . Car04g01647 Car15g00317 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008683 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00501 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.432499 0.0 0.0 11.699398 7.946511 7.393795