Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00505 ATGGAGGAATCATTAGTAGTGGATGTTCTAAACGACGAACATACGGTGGAAGAGAATGCTTCGACGAAACCACTTCTTGAGGTTTCGGTTTCTTTTGGTAGATTTGAGAATGATTTATTGTCTTGGGAGAAATGGTCGACTTTCTCTCCCAATAAGTATTTGGAAGAAGTTGAGAAGTACGCAACACCCGGATCTGTTGCTCAGAAGAGGGCTTACTTTGAAGCTCATTACAAGAAGATAGCGGATAGAAAAACTAAGTTATTGGAGCAAGAGAGGGAAATGGAATTTAATACTACAGTAGCGAGTGAACTGAACGGTGGAGGAGATCTAATGGACCACAGTGAAAGGGCTGATTCCAAATCCAAGACATCGAACCACCATGTTTCTGCTGAAGAAGTTGACCGAAACGCGACGTTGATTGGTGAGGTCAGTAGTGTTTACCAAGAAGTGGTGAAGGATGATGTTGAAAGTAATGTAGGATGTGAAAGCTTACCAGATGATGAAAAGGAAGAACCTGATGGAAAATTTGATTGTGTTGGTTCCGACTCCGAAATTAGCAAACAAGAAGAAGTTGTAGTGAAAGAAGTGGAAACTCCTCCTCCTCCCGTTGAATCTCGGACCACGAAGGAACCTCCACAAAAATTGGTCAATAAAGTATCGGCAGTATCGAAAGTCAAACAGCAGATTCTAAAACCAAATCGACCAAAAGAATCTAAGAAGACCACTCCAGTAGTCAAGGAACATAACAGTGCGAGTGTCAAGAAGAAACCGGTATCGTCCACCGCCAAAGCACCCCAGATTTCGACCCCCAAACTCTCCAAGACAACACCAGGACCCACCACACCTGCAGCACGCTCTTTTGTGGCACGGTCCTCTGTGAACAAGGGAAGTAATTCATCTCTATTAAGGAGCCGGAATCCATCTTCTGTTGAAAGCAAGAAAGTAGCTCCTAAGTCTCTGCATATGTCTCTTAGTCTGGGAACTCCCAACTCTGATCCATCTTCTGTTAACGGAATTAGAAGATCTTTCATCATGGAGAAAATGGGGGACAAGGACATTGTAAAACGGGCATTTAAGACATTTCAGAACAGTTTCAACCAAATGAAATCGTCTCCTCAAGAGGAGAGGTCTTCTGCTCCTAAGATGGTTCCTGCGAAGGAGAGAGAAACAACAAAAATCTCCACTTCCGTGGCTGCTAAAAAGGAGAATGGAGGGATGCACAAAGTAAGTGGTACAATAAGAGGTACAGATAACAGAACAGCCAGGGTTGCTCCATCTCAAAAGTTGGAAGGAAAAGCCAATGCAAAAGTTATTGGGAGAACAACCCTCCAATCAAAATCTAAGATTGTCCCATCTCAGAAAGCGGAGGAGAAATTTAATCCCAGAGAGGGAGGAAGAACAAATCTTCTGTCAAAATCAAAGGTTGGCTGGAGTGTGACATTTTATTTGATCTTTTCATTTCACATTATTGTTGTATCTGTCTGCTCCTGCAATGAATATAAGATCAAAACTGGTCAATGA 1521 42.54 MEESLVVDVLNDEHTVEENASTKPLLEVSVSFGRFENDLLSWEKWSTFSPNKYLEEVEKYATPGSVAQKRAYFEAHYKKIADRKTKLLEQEREMEFNTTVASELNGGGDLMDHSERADSKSKTSNHHVSAEEVDRNATLIGEVSSVYQEVVKDDVESNVGCESLPDDEKEEPDGKFDCVGSDSEISKQEEVVVKEVETPPPPVESRTTKEPPQKLVNKVSAVSKVKQQILKPNRPKESKKTTPVVKEHNSASVKKKPVSSTAKAPQISTPKLSKTTPGPTTPAARSFVARSSVNKGSNSSLLRSRNPSSVESKKVAPKSLHMSLSLGTPNSDPSSVNGIRRSFIMEKMGDKDIVKRAFKTFQNSFNQMKSSPQEERSSAPKMVPAKERETTKISTSVAAKKENGGMHKVSGTIRGTDNRTARVAPSQKLEGKANAKVIGRTTLQSKSKIVPSQKAEEKFNPREGGRTNLLSKSKVGWSVTFYLIFSFHIIVVSVCSCNEYKIKTGQ 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4689668 4693274 + Lsi04G005050.1 Lsi04g00505 660554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00505 506 MobiDBLite consensus disorder prediction 230 253 - -
Lsi04g00505 506 PANTHER F3I6.9 PROTEIN 1 474 - -
Lsi04g00505 506 MobiDBLite consensus disorder prediction 162 194 - -
Lsi04g00505 506 MobiDBLite consensus disorder prediction 323 338 - -
Lsi04g00505 506 MobiDBLite consensus disorder prediction 102 139 - -
Lsi04g00505 506 MobiDBLite consensus disorder prediction 109 133 - -
Lsi04g00505 506 PANTHER F3I6.9 PROTEIN 1 474 - -
Lsi04g00505 506 MobiDBLite consensus disorder prediction 364 394 - -
Lsi04g00505 506 MobiDBLite consensus disorder prediction 154 338 - -
Lsi04g00505 506 MobiDBLite consensus disorder prediction 210 227 - -
Lsi04g00505 506 MobiDBLite consensus disorder prediction 254 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00505 - - - csv:101209261 797.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00505 Lsi-Chr4:4689668 Lsi04g01132 Lsi-Chr4:15244116 8.31E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g796 Blo01g00408 Blo16g01145 Bda01g02240 Bda11g01248 Bpe13g00476 . . . Cmo04g01677 . . . . . Sed06g1595 . Cpe01g01417 Bhi07g01660 Tan04g1166 Cmetu10g1704 . . . . Cla05g02506 Cam05g2690 Cec05g2723 Cco05g2758 Clacu05g2693 Cmu05g2547 Cre05g2662 . . . Cone12ag0619 Lsi04g00505 Csa05g02378 Chy10g00943 Cme10g00484 Blo06g00860 . . Bda11g01248 . . Bma01g00070 . . . . Cma04g01602 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003701 3 7 3 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00505 Lsi_Chr04 FPKM 22.942308 29.365383 21.829069 19.14842 12.888289 11.952692 14.179151 42.06131 45.983624 41.392708