Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00506 ATGGATTTGCTGCTTCACCTTCACCTTCAGCCATGGCAGCATCTTCATCTCTTCCTTCTCTTCCTTTCTGTTTCCCATGTTTGTTATTGCCAACTCAGTCCCCCTCAGAATATCGAAACTTTTTACCCTTCCCCATTTATTCCTCAACCACCGTCGCCAATTTCGCCGTCGTCTTCACTTAACCATCCGCCGTCGTCCACGTCAACGAGGACCATCGCCACGGCGGTGGCTGTCACTGCAGTGGGTGTGGCTCTGATTTCCACGTTGTTCTTCTTTTTAATACAGAGATATGTGATCGGAAGAAAACGAAAAACAGAGGAGGCAAATTCAGGGACGGGACCGGGTTTTGTCTCGCAGCCGGCGGTTGCTCAGAGTGAATTTCCGCGTGTTGATGGGAATCTTAAAGGGTTTATTGTGGATGAAAATGGGTTGGATGTGATTTATTGGAAGAGACTTGAAAGAAAGAAATCCAAGAATAGCTTTGATCGGAGTGACGGAGAAGGAAATGTTAAGGAAAATCGAAGCAAAAAGTCAGAGCCTGTTCAAGAAATTCCTCTGCTTCGAGGAAAATCTTCGACTTCGCATGTTAAAATTGCACCGGAAGATGAAGAACCCAGTCGGATTACATCTCCTCCGCCCCCTCCGCCGCCCCAGATTAACAACCCTCCGCCATTTACTGGGAATTCTGTTCAGTCAGTTGGAAAACCATCGAGTAGTTCAAATCTCTCATCAACAGCACCACTGCAACCGGCGGCAATTCAGGTACCTCCGTCGCAATCTCTCATGGCTGTTCCCAACAATAAGAGCTCTGTTCCGCCGCCGCCCCCACCGATTCCAGCAAAGACCAATTCAAGACTGCCGCCGCCGCCACCTCCCATTCCGTCCAAGACCAATTCAAGACCGTCGCCGCCACCACCTATTCAATCCAAGACCAATTCAGCAGCACCACCTCCCCCTCCTATACCGGCCAAGACAAATCCGGCAGCACCACCGCCGCCACCGCCCAAGGCCGGCGGTTCCAAATTGCCCTTAAGGCCTGCACCTCCAAAAGACGGCACTAAATCCTCTCTAGAGGGTTCTTCATCAGCCGACAATGGTCAGGTTAAAATGAAGCCCCTGCATTGGGATAAAGTGAACACTACAAATGCCGATCATTCCATGGTTTGGGACAAAATGAGCACCGGTTCTTTCAAATTTGATGGGGATCTTATGGAAGCTCTTTTTGGATATGTCGCAACCAACCGGAAATCCCCCCGGAGTGAAGCTAGTGCTTCAGCAAACGTCGTTGGCCGGAACTCAGGGCCGTCGCAAACTTTTATTCTTGAACCGAAAAAATCTCAGAACATAGCCATTGTAATCAAGTCCTTGACCATTCCTCGCAACGAAATCCTCGATGCGCTCAACGAAGGTCAAGGCCTCGAAACAGAGATTCTTGAGAAACTCACAAGAATTGCTCTAACTCAAGAAGAAATTTCCCAAATCCTTGCTTACAAAGGAGATCCCCAGAAGCTTGCTGATGCTGAAACTTTCCTTTACCATCTTCTCAAATCGGTTCCATCTGCCTTTACGCGCTTTAACGCCATGCTTTTCCGATTGAATTTCACTTCCGAGATTCTCCATCTCAAGGAATCTCTACAAACTCTGGAATCCGCCTGCAAGGAGCTAAGAACTCGTGGGCTGTTTTTAAAATTGCTTGAAGCAATTCTCAAAGCTGGGAATCGATTGAATGCAGGAACTACAAGAGGAAATGCCAGAGCTTTCAACCTTACAGCTCTTCGGAAGCTCTCTGATGTTCGAAGCACTGATGGGAAAACCACTTTGCTTCACTTTGTAGTGCAAGAAGTGATCAGGGCAGAAGGGAAAAAGTGTGTTTTAAACAGGAACAAGAGCTTGAGCCGTAATAGCAGCCATAGCAGTGACAACAGCTTTAGCAGTTTCGAAAATTCAACTGCAAAGGAGGACAGAGTAAAGGAATATATGATGTTGGGACTGCCAGTGGTGGGAGGTCTAAGCGCTGAGTTTTCTAATGTAAAGAAAGCGGCAGCGATCGACTACGAGAGCTTCGCCAAGGCCGGGCCGTTCCTGACTAGCCGAACCGCAGAAATCCGGCAGCTCTTGACTCAAATTGGGAACAATGAAGGTGGTTTTGCTAAAGAAATGAGAGGGTTTCTTGAGGCAGCAGAGAATGAGCTGAAGGTGGTGAGGGAAGAACAGACGAAGGTAATGGAGTTAGTGATGAAGACAACAGAGTATTATCAGGCAGGAAGTTCAAAAGATAAAGAAGCAAATCGGCTTCAATTATTTATTATAGTTAAAGATTTCCTAGAAATGGTAGATCGAGTGTGTGTTGAAATTACTCGAGATCTCCAGAGGAAGAGATCGTCGGGAGTAAATGTGGGTTCGGGTTCGTCGCCGGTGAGATCAAAGGCCATTTTCCATAACTTGCCGGAAAATTTTATGTCAGACAAGTCCAGAGGCAGTTCTAGTGATACAGATGATGAATTCTGA 2508 47.21 MDLLLHLHLQPWQHLHLFLLFLSVSHVCYCQLSPPQNIETFYPSPFIPQPPSPISPSSSLNHPPSSTSTRTIATAVAVTAVGVALISTLFFFLIQRYVIGRKRKTEEANSGTGPGFVSQPAVAQSEFPRVDGNLKGFIVDENGLDVIYWKRLERKKSKNSFDRSDGEGNVKENRSKKSEPVQEIPLLRGKSSTSHVKIAPEDEEPSRITSPPPPPPPQINNPPPFTGNSVQSVGKPSSSSNLSSTAPLQPAAIQVPPSQSLMAVPNNKSSVPPPPPPIPAKTNSRLPPPPPPIPSKTNSRPSPPPPIQSKTNSAAPPPPPIPAKTNPAAPPPPPPKAGGSKLPLRPAPPKDGTKSSLEGSSSADNGQVKMKPLHWDKVNTTNADHSMVWDKMSTGSFKFDGDLMEALFGYVATNRKSPRSEASASANVVGRNSGPSQTFILEPKKSQNIAIVIKSLTIPRNEILDALNEGQGLETEILEKLTRIALTQEEISQILAYKGDPQKLADAETFLYHLLKSVPSAFTRFNAMLFRLNFTSEILHLKESLQTLESACKELRTRGLFLKLLEAILKAGNRLNAGTTRGNARAFNLTALRKLSDVRSTDGKTTLLHFVVQEVIRAEGKKCVLNRNKSLSRNSSHSSDNSFSSFENSTAKEDRVKEYMMLGLPVVGGLSAEFSNVKKAAAIDYESFAKAGPFLTSRTAEIRQLLTQIGNNEGGFAKEMRGFLEAAENELKVVREEQTKVMELVMKTTEYYQAGSSKDKEANRLQLFIIVKDFLEMVDRVCVEITRDLQRKRSSGVNVGSGSSPVRSKAIFHNLPENFMSDKSRGSSSDTDDEF 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4693950 4696996 - Lsi04G005060.1 Lsi04g00506 660555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00506 835 MobiDBLite consensus disorder prediction 157 373 - -
Lsi04g00506 835 MobiDBLite consensus disorder prediction 268 342 - -
Lsi04g00506 835 Gene3D Formin, FH2 domain 380 796 IPR042201 -
Lsi04g00506 835 PANTHER FORMIN-LIKE PROTEIN 4 11 831 - -
Lsi04g00506 835 Coils Coil 538 558 - -
Lsi04g00506 835 Coils Coil 717 744 - -
Lsi04g00506 835 ProSiteProfiles Formin homology-2 (FH2) domain profile. 360 804 IPR015425 -
Lsi04g00506 835 SUPERFAMILY Formin homology 2 domain (FH2 domain) 373 792 - -
Lsi04g00506 835 SMART it6_source 360 793 IPR015425 -
Lsi04g00506 835 PANTHER FORMIN-RELATED 11 831 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lsi04g00506 835 MobiDBLite consensus disorder prediction 224 267 - -
Lsi04g00506 835 MobiDBLite consensus disorder prediction 157 183 - -
Lsi04g00506 835 MobiDBLite consensus disorder prediction 206 223 - -
Lsi04g00506 835 Pfam Formin Homology 2 Domain 363 779 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00506 Lsi-Chr4:4693950 Lsi08g00735 Lsi-Chr8:15695699 1.43E-22 dispersed
Lsi04g00506 Lsi-Chr4:4693950 Lsi10g00514 Lsi-Chr10:7336609 1.52E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00506 - - csv:101208197 1197.57