Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi04g00507 | ATGGCCAGAAACCCCATCTTCTCCCGCCGCCGGAGGTCCGATCACCTCGACGGTTTAGATCGTTTCCCAACCTCTGATTCCGAGGTTCATGTTCTCGCCGTCGATGACAGCCTCGTCGATCGTACAGTAATTGAACGTCTCCTCCGCCTCACTGCCTGTCGAGTTACTGCAGTGGATAGTGGAATTAGAGCTTTACAATATCTCGGATTGCAAGAGGAGACTAATTCACAAGTTGGTTTTGATAGCTTGAAGGTCGATATGATCATAACCGACTACTGTATGCCCGGAATGACAGGATACGAATTGCTAAAGAAAATCAAGGAATCATCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAGAACGTGGTGGCGAGAATAGACAGATGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAACGGCTCAGGGAATATATGATGGGGGACGAAAAGACTGGAAGTGAAAGAAGCGGGATCAACAAAAGGAAGGTACGAGAGCCGTGTGATCAACCTTCATCATCGCCAACGTCATCGGATTCCTCTCCATGTCCATCATCTTCCTCACCGTCAGATTCGCTTCAATCCACCCCATCATCGTCAGAGCCGTCTTCTCCGACGTCCACTCCTCAATCCGACGGCTCTAAATGA | 681 | 48.9 | MARNPIFSRRRRSDHLDGLDRFPTSDSEVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQEETNSQVGFDSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMMGDEKTGSERSGINKRKVREPCDQPSSSPTSSDSSPCPSSSSPSDSLQSTPSSSEPSSPTSTPQSDGSK | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4705253 | 4706953 | - | Lsi04G005070.1 | Lsi04g00507 | 660556 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi04g00507 | 226 | MobiDBLite | consensus disorder prediction | 180 | 226 | - | - | |
Lsi04g00507 | 226 | ProSiteProfiles | Response regulatory domain profile. | 30 | 158 | IPR001789 | GO:0000160 | |
Lsi04g00507 | 226 | Pfam | Response regulator receiver domain | 31 | 150 | IPR001789 | GO:0000160 | |
Lsi04g00507 | 226 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 13 | 220 | IPR045279 | GO:0009736 | |
Lsi04g00507 | 226 | SMART | REC_2 | 29 | 154 | IPR001789 | GO:0000160 | |
Lsi04g00507 | 226 | CDD | REC_typeA_ARR | 31 | 153 | - | - | |
Lsi04g00507 | 226 | MobiDBLite | consensus disorder prediction | 158 | 179 | - | - | |
Lsi04g00507 | 226 | Gene3D | - | 29 | 186 | - | - | |
Lsi04g00507 | 226 | MobiDBLite | consensus disorder prediction | 158 | 226 | - | - | |
Lsi04g00507 | 226 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED | 13 | 220 | - | - | |
Lsi04g00507 | 226 | SUPERFAMILY | CheY-like | 29 | 155 | IPR011006 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01597 | Lsi-Chr3:26990232 | Lsi04g00507 | Lsi-Chr4:4705253 | 2.05E-55 | dispersed | |
Lsi04g00507 | Lsi-Chr4:4705253 | Lsi09g00795 | Lsi-Chr9:9086452 | 4.48E-55 | dispersed | |
Lsi04g00507 | Lsi-Chr4:4705253 | Lsi06g01513 | Lsi-Chr6:25558287 | 1.57E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25142 | PF00072 | Response_reg | 1.30E-21 | CL0304 | Lsi | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi04g00507 | K14492 | - | csv:101209506 | 335.109 |