Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00507 ATGGCCAGAAACCCCATCTTCTCCCGCCGCCGGAGGTCCGATCACCTCGACGGTTTAGATCGTTTCCCAACCTCTGATTCCGAGGTTCATGTTCTCGCCGTCGATGACAGCCTCGTCGATCGTACAGTAATTGAACGTCTCCTCCGCCTCACTGCCTGTCGAGTTACTGCAGTGGATAGTGGAATTAGAGCTTTACAATATCTCGGATTGCAAGAGGAGACTAATTCACAAGTTGGTTTTGATAGCTTGAAGGTCGATATGATCATAACCGACTACTGTATGCCCGGAATGACAGGATACGAATTGCTAAAGAAAATCAAGGAATCATCAACTCTGAGAGAGATTCCGGTGGTGATTATGTCGTCGGAGAACGTGGTGGCGAGAATAGACAGATGTTTGGAGGAAGGGGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGAAACGGCTCAGGGAATATATGATGGGGGACGAAAAGACTGGAAGTGAAAGAAGCGGGATCAACAAAAGGAAGGTACGAGAGCCGTGTGATCAACCTTCATCATCGCCAACGTCATCGGATTCCTCTCCATGTCCATCATCTTCCTCACCGTCAGATTCGCTTCAATCCACCCCATCATCGTCAGAGCCGTCTTCTCCGACGTCCACTCCTCAATCCGACGGCTCTAAATGA 681 48.9 MARNPIFSRRRRSDHLDGLDRFPTSDSEVHVLAVDDSLVDRTVIERLLRLTACRVTAVDSGIRALQYLGLQEETNSQVGFDSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMMGDEKTGSERSGINKRKVREPCDQPSSSPTSSDSSPCPSSSSPSDSLQSTPSSSEPSSPTSTPQSDGSK 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4705253 4706953 - Lsi04G005070.1 Lsi04g00507 660556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00507 226 MobiDBLite consensus disorder prediction 180 226 - -
Lsi04g00507 226 ProSiteProfiles Response regulatory domain profile. 30 158 IPR001789 GO:0000160
Lsi04g00507 226 Pfam Response regulator receiver domain 31 150 IPR001789 GO:0000160
Lsi04g00507 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 220 IPR045279 GO:0009736
Lsi04g00507 226 SMART REC_2 29 154 IPR001789 GO:0000160
Lsi04g00507 226 CDD REC_typeA_ARR 31 153 - -
Lsi04g00507 226 MobiDBLite consensus disorder prediction 158 179 - -
Lsi04g00507 226 Gene3D - 29 186 - -
Lsi04g00507 226 MobiDBLite consensus disorder prediction 158 226 - -
Lsi04g00507 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 13 220 - -
Lsi04g00507 226 SUPERFAMILY CheY-like 29 155 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01597 Lsi-Chr3:26990232 Lsi04g00507 Lsi-Chr4:4705253 2.05E-55 dispersed
Lsi04g00507 Lsi-Chr4:4705253 Lsi09g00795 Lsi-Chr9:9086452 4.48E-55 dispersed
Lsi04g00507 Lsi-Chr4:4705253 Lsi06g01513 Lsi-Chr6:25558287 1.57E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25142 PF00072 Response_reg 1.30E-21 CL0304 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00507 K14492 - csv:101209506 335.109