Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00508 ATGGAGTGCGCCGGCAAGGGACGAGGAACTCGTTGCACCGGTCCGGCCACTCGACGCTGTGGTCGCTGTGGAGTTGTTGCTTACTGTTCAGTCGATCACCAGGTTAAACATTGGAATGATCATAAAGATGAATGCAAAAGGTTTGAACTACAAATGGAGAGATTAGATGCCTTGAACGAGTTCCCTTTCACATTTTCCGAGGAGGCTACTGTTCAGGAGAGTAGATGCTCATTCTTGAGCAAAAGGGCCATCCACAAAATTGGAATGTGGTTTTACGAATGTCCTTGTGGGGAAGCTGCTACATCTTATAATTTCTCAAGATTAAATGATGGTTGGGTTCTACCTAGATTCCTTTGTCCATGTAGTGTTCAGCCACTTACAATAAGTTATGCTGTGCAAGTTGCTGGTTTGGAGCCCTTGACTCCAGAATTTGGCGACACATTATGTATACATTATCTAGGGCCTGAGAAGGAGCTTCTACAGCTCTCTGTTTTTGCTGAGCTGCTTGCACTTTTTCCTGGGGTGGCATTACAAATAGAGCTTGTTGGGCCTAGAATTCCCGAAGAAATGAATGGTGAGACCATTGACCTTTGCAGTTTTGCTAAGTGCCTTCAGATGGATTGTGTTTGCAAATCTTCAAGCAAAGATGTTGACAGGGATGCATATTCTAATAAATATCCACGGTTGGTGTTGAAGCTTCGAAGAGGGCTTTACCATGATTGTTACAAAGACATTATCAAAGATTGTTATCCTCACTTAATCATTGCTCCAAATGCTGGGATCGCTGCCTATTCCAGTTGGCTACCGACTATTGAACTTATTAAGGAAATAAAAGTCCCAGCAATCTTTTCTGATTTCTGTGAAGAAGCTTGCCATCTTGGAGCTTCTTGTTTGAGCAGTGTGATAGGCCGCCCCATTACATTCCCGGTGAATCAAGTGGTTGCTTGTTTATTAAGAGGATATATTAAGTTTGACTTCATTGTCATTGTATCTCAAGATTTTGGCGCCTTAGGCGTATCAGCAGCCATGTGCTTGTGCTGTTTCGGTGCGAATTTGGGTCGGGCTCTGAAGTTGCCCTTCAGGGCCAACGATGTGCTTCCGGTTCTCCCACGACAGATATCGTGGCCGGTTCTTAATAATCTCCACACTGCCGTGGATTTGTTGCCGTATTATGTTGGGTCGGTGACTCCCAGTAATGGAACGATTGAGTGGAAAGGAGCTTGCTTCTTCACTAACGAAGCTCAGATTAATCTTACTGAAGGCGATAGAGGCTTGGGAGGTGGTGTTCTCCGTCTCAAGACATCTGCAGCACACAGCTGGACCTGTATGGATCTATATGTTTTTGCAACACCCTACAGGATTACATGGGATTACTATTTCTCTGCACGGGAGCACACATTGAAGATTGAGTCGTGGGAAGAACCTGCCGAGTTGGAATATGTTAAGCAACATGGGATTTCAGTTTTTCTTATGCCGTCTGGGATGTTGGGAACTCTGCTCTCTTTGGTAGATGTGTTACCTCTGTTTTCCAACACCATTTGGGGCCAAAATGCCAATTTAGCTTTCCTTAAGAAGCACATGGGTGCTACATTTGAAAAGCGATCCCAGCCTTGGCAAGCAACTATCAATCCAGATGATGTTCATTCTGGTGATTTCTTAGCCGTGTCCAAAATACGTGGACGGTGGGGAGGCTTTGAGACATTAGAAAAGTGGGTAACGGGGTCTTTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAACAGGGTAATCTTTGGGTTGGTGAATCAGGACACGAGAATGAGAAGGGTGAAGAAATCATTGTGGTGATTCCATGGGATGAATGGTGGGAGTTGGCACTCAAGGACAACTCAAATCCACAAGTAGCCTTGCTTCCTTTGCGTCCACAGATACGTGCAAAATTCAACTCTACTGCAGCATGGGAATATGCTCGAAGCATGTCTGGGAAGCCATATGGTTATCACAACATGATTTTTAGCTGGATTGATACCGTAACTGACAACTTTCCTCCTCCTCTTGATGCTCACTTGTCTATAGATTTATGGAATGAACCCACTCATGTTGCAGTGGACATGGATGAGGTTATTTCTGTCATGTCTATGTGGACTAGGTTGCAGCCAGCATATGCTGCAAACATGTGGAATGAGGCTCTGAACAAGCGGCTTGGAACTGAGGATTTGGACTTGCACGACATTCTAGTTGAGACTGAAAAGCGAGGAATTCCTTTCGATGTACTGCTTACAATTCCTGAACAAGATGAATGGGTCTACAGTGATGGGAAATCGACAACATGTGTTGCCTTTATCCTTGCAATGTACAAGGAGGCTGGAATATTTGGTCCTGTATCCAGCTCCATTCAAGTAACAGAGTTCACTATTCGGGATGCATATATGCTGAAGATTTTTGAGGACAACCATACACGTCTGCCAACTTGGTGCAACAATGAAAGTGATAAACTTCCTTTTTGCCAGATTCTTGGTGAGTACAAAATGGAACTGCCTCAATACAATACCTTAGAACCTTATGCCAATATGAATGAAAATTGCCCCTCCCTACCCCCAACCTACGATCGACCCATTCGATGTTAG 2607 44.38 MECAGKGRGTRCTGPATRRCGRCGVVAYCSVDHQVKHWNDHKDECKRFELQMERLDALNEFPFTFSEEATVQESRCSFLSKRAIHKIGMWFYECPCGEAATSYNFSRLNDGWVLPRFLCPCSVQPLTISYAVQVAGLEPLTPEFGDTLCIHYLGPEKELLQLSVFAELLALFPGVALQIELVGPRIPEEMNGETIDLCSFAKCLQMDCVCKSSSKDVDRDAYSNKYPRLVLKLRRGLYHDCYKDIIKDCYPHLIIAPNAGIAAYSSWLPTIELIKEIKVPAIFSDFCEEACHLGASCLSSVIGRPITFPVNQVVACLLRGYIKFDFIVIVSQDFGALGVSAAMCLCCFGANLGRALKLPFRANDVLPVLPRQISWPVLNNLHTAVDLLPYYVGSVTPSNGTIEWKGACFFTNEAQINLTEGDRGLGGGVLRLKTSAAHSWTCMDLYVFATPYRITWDYYFSAREHTLKIESWEEPAELEYVKQHGISVFLMPSGMLGTLLSLVDVLPLFSNTIWGQNANLAFLKKHMGATFEKRSQPWQATINPDDVHSGDFLAVSKIRGRWGGFETLEKWVTGSFAGHTAVCLKDEQGNLWVGESGHENEKGEEIIVVIPWDEWWELALKDNSNPQVALLPLRPQIRAKFNSTAAWEYARSMSGKPYGYHNMIFSWIDTVTDNFPPPLDAHLSIDLWNEPTHVAVDMDEVISVMSMWTRLQPAYAANMWNEALNKRLGTEDLDLHDILVETEKRGIPFDVLLTIPEQDEWVYSDGKSTTCVAFILAMYKEAGIFGPVSSSIQVTEFTIRDAYMLKIFEDNHTRLPTWCNNESDKLPFCQILGEYKMELPQYNTLEPYANMNENCPSLPPTYDRPIRC 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4720824 4732658 + Lsi04G005080.1 Lsi04g00508 660557

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00508 868 Pfam MYND finger 11 45 IPR002893 -
Lsi04g00508 868 SUPERFAMILY HIT/MYND zinc finger-like 11 48 - -
Lsi04g00508 868 ProSiteProfiles Zinc finger MYND-type profile. 3 45 IPR002893 -
Lsi04g00508 868 PANTHER OS01G0793500 PROTEIN 342 868 - -
Lsi04g00508 868 Pfam MSS51 C-terminal domain 125 303 IPR046824 -
Lsi04g00508 868 Gene3D - 3 50 - -
Lsi04g00508 868 PANTHER ZINC FINGER MYND DOMAIN PROTEIN 342 868 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00508 - - - csv:101209749 1010.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00508 Lsi-Chr4:4720824 Lsi04g01215 Lsi-Chr4:18709791 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g792 . . . . . Bpe10g00822 . Bma15g00200 Cmo04g01673 . . . . . Sed06g1599 . Cpe01g01414 Bhi07g01670 Tan04g1172 Cmetu10g0345 . Hepe10g1678 . . Cla05g02509 Cam05g2693 Cec05g2727 Cco05g2761 Clacu05g2696 Cmu05g2550 Cre05g2665 . . . . Lsi04g00508 Csa05g02373 Chy10g00938 Cme10g00488 Blo06g00862 . Bda07g01571 . Bpe11g01739 . . . . . . Cma04g01598 . Car04g01644 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000656 4 3 3 2 4 4 4 3 3 3 2 3 5 3 3 6 3 5 4 3 3 3 2 2 4 3 1 4 2 3 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00508 Lsi_Chr04 FPKM 10.219616 11.51687 0.0 0.0 1.709769 2.19425 1.962187 0.0 0.0 0.0