Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00510 ATGGAGTTTCTGTACATAATTATCACTTCCATTTTTTTGCCTTTAAGCTTCTCTCTTAACCTTGAAGCTACTCTCCATGGAACCACACCGAGTTCTCTTCAAACCAATCATAATTCTTCACTCAGACACCAAATTCTGGACCTTGCCAATCATCCCACCACTGTAAATTGGATGAAGACCATAAGGAGAAAAATCCACGAGAACCCAGAACTTGCTTTTGAAGAATTTGAAACCAGTAAGCTTATTAGACAGGAGCTTGACAATCTCCACGTTTCTTATCGATGGCCGGTCGCCGGTACCGGCGTAGTGGCTTTCGTCGGCTCTGGTTCTCCTCCCTTTGTCGCTCTAAGAGCTGATATGGATGCTTTGCCTATTGAGGAATTGGTGGAATGGGAGCATAAGAGCAAAGTTGTGGGGAAAATGCATGCTTGTAGTCATGATGCTCATGTTGCTATGCTCCTTGGTGCTACTAAGATTCTGAATCAACTGCGACAGAAATTACAGGGCACTGTTGTTCTTATATTTCAGCCAGCGGAGGAGAGAGGAGGAGGAGCAAAAGACATGATAAATGAAGGTGTCCTTGATGGTGTAGAAGCTATATTTGGGCTGCACCTTGTGCATAAATATCCAGTCGGCATTGTCGCTTCACGGCCCGGCGAGTTTCTTGCAGGGTGTGGAAGCTTCAAAGCAAAGATAAAGGGGAAAGGGGGTCATGCTGCAATTCCACAGCATTCCATTGATCCTATTTTGGCAGCTTCAGCAGCAATTATTAGTTTGCAAAGCATTGTCTCAAGAGAGATAGACCCTTTAGATTCTCAGGTGGTTTCTGTGGCCATGGTTCAAGCAGGAGCTGCACTCAATGTCATCCCGGACTCGGCGACTATTGTCGGTACCTTCAGAGCTTTCAGCAAGAAGAGCTTCAATGCTCTCAGAGATAGGATAGAAGAGATCATAAACGGGCAGGCAGCGGTACATCGGTGCACGGCGGAGATTGATTTCCTAGGCAAGGAACACCCAACAATTCCTCCAACTATAAATGATGAACAAATTTATGAACACGTTCGGCGTGTCTCAATGGAAATTGTAGGAAAAGAAAAAACAGAAGTATCTCCAAACTTTATGGGAAGTGAAGATTTTGCTTTCTTTTCAGACAAAGTGCCAGGATCTTTCTTATTTCTAGGCACATATAATGAGAGGATTGGAGCTATACATCCTCCACACAGCCCTCACTATAAAATTGATGAGAATGTGCTTCCTATTGGTGCAGCAATTCATGCAGCACTTGCATATTCTTATATCTTGAATTCATCATCAACATCCCATTCTTTCTCTGACCACTGA 1341 43.85 MEFLYIIITSIFLPLSFSLNLEATLHGTTPSSLQTNHNSSLRHQILDLANHPTTVNWMKTIRRKIHENPELAFEEFETSKLIRQELDNLHVSYRWPVAGTGVVAFVGSGSPPFVALRADMDALPIEELVEWEHKSKVVGKMHACSHDAHVAMLLGATKILNQLRQKLQGTVVLIFQPAEERGGGAKDMINEGVLDGVEAIFGLHLVHKYPVGIVASRPGEFLAGCGSFKAKIKGKGGHAAIPQHSIDPILAASAAIISLQSIVSREIDPLDSQVVSVAMVQAGAALNVIPDSATIVGTFRAFSKKSFNALRDRIEEIINGQAAVHRCTAEIDFLGKEHPTIPPTINDEQIYEHVRRVSMEIVGKEKTEVSPNFMGSEDFAFFSDKVPGSFLFLGTYNERIGAIHPPHSPHYKIDENVLPIGAAIHAALAYSYILNSSSTSHSFSDH 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4748600 4751807 + Lsi04G005100.1 Lsi04g00510 660559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00510 446 Pfam Peptidase dimerisation domain 224 323 IPR011650 -
Lsi04g00510 446 Pfam Peptidase family M20/M25/M40 115 429 IPR002933 GO:0016787
Lsi04g00510 446 Gene3D Zn peptidases 60 418 - -
Lsi04g00510 446 PANTHER PEPTIDASE M20 FAMILY MEMBER 6 441 IPR017439 GO:0016787
Lsi04g00510 446 SUPERFAMILY Zn-dependent exopeptidases 54 435 - -
Lsi04g00510 446 CDD M20_IAA_Hyd 58 433 IPR044757 GO:0009850|GO:0016787
Lsi04g00510 446 TIGRFAM amidohydrolases: amidohydrolase 59 421 IPR017439 GO:0016787
Lsi04g00510 446 SUPERFAMILY Bacterial exopeptidase dimerisation domain 223 342 IPR036264 -
Lsi04g00510 446 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 2 6 441 - -
Lsi04g00510 446 Gene3D - 223 341 - -
Lsi04g00510 446 PIRSF Amidohydrol_AmhX 45 436 IPR017439 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00510 K14664 ILR1; IAA-amino acid hydrolase [EC:3.5.1.-] - csv:101208682 781.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01860 Lsi-Chr3:30029882 Lsi04g00510 Lsi-Chr4:4748600 4.43E-151 dispersed
Lsi04g00510 Lsi-Chr4:4748600 Lsi08g00440 Lsi-Chr8:11986661 1.08E-165 dispersed
Lsi04g00510 Lsi-Chr4:4748600 Lsi06g00239 Lsi-Chr6:2746701 1.56E-167 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g786 . . . . . . . . . . . . . . Sed06g1602 . . Bhi07g01672 Tan04g1177 Cmetu10g1745 Lac13g0238 Hepe10g1675 . . Cla05g02511 Cam05g2695 Cec05g2729 Cco05g2763 Clacu05g2698 Cmu05g2552 Cre05g2667 . . . . Lsi04g00510 Csa05g02371 Chy10g00935 Cme10g00490 . . Bda07g01569 . Bpe11g01737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011718 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00510 Lsi_Chr04 FPKM 40.770115 43.661552 32.970188 30.376673 50.744602 76.802887 49.138206 45.498161 46.732433 40.668709