Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00515 ATGAGGAAAGCGGCGATCATGTCCGTATCGATTTCCAACTGCTTCTCTAATTTACTCTGTCAGGAAGATTCTTCCGGCGTCTTCTCCGGCGAGTCCCCGGGGTGTTCTTCCGACCTCGATTCTCCGGCCGGCGTCGAGGAATCTATTGCCGTCTTCATCAAGAATGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGCGCTACCAATCTCCGTCGCTTGATGCGGCTGCTAGATTAGACTCTATTGCATGGATTCTTAAGGTACGGATTTCTTTTGTGCTTCTCCGATTTGCTTCACAATCGAACTTTTTCATTAATTACCAAAATGCCACTCTTCACGTGACGAATATTGCGGTATTGTATTATCCCACCAGAATCCGTCGGCGATTACTGGTACTGAGTCAGATCCGAGTCGATCGAATCGGAGTTCGTATCAGTGGCCGTTGGCGAATCCGTTTAATATATTATGATTATTTATATCCGTCTCCGTCGCACACGGCGGTTCAAGCGTATTACGGTTTTCAGCCGTTAACAGCGTATCTCTCCGTCAACTACTTGGATCGCTTCCTTTGTTCACGCCGTTTGCCGATTCAAGATGATCGTCGAGCGATTCGAGTGATCATTGCTTTTTTTGTTACATTTAATGGGAATCGGAGTGAAAGAACGCCAACAAATGGGTGGCCATTGCAACTCCTCTCTGTTGCTTGTCTCTCGCTCGCTGCTAAAATGGAGGAACCTCTTGTTCCTGCATTACTGGATCTTCAGGTTGAAGGGGCTAAATATATATTTGAACCCAGAACAATATGCAGGATGGAATTATTAGTGCTGAGGGTATTGGATTGGCGGCTGCGTTCAGTAACACCGTTCAATTTCATAGCATTCTTTGCTTGCAAGCTCGACCCATCTGGAGATTTCATTGGGTTTCTTATCTCAAGAGCAACAGAAATTATACTGTCGCATATCCGAGAGGTAATATTTCTGGAGTACTGGCCATCGTGTATTGCGGCGGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCAAATTTGTCTGTTGTCAATCCAGAACATGCTGAATCATGGTGCGGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGCAAGAGATTTTGCTTGATAATTGCCGGAGAAAGTCCCCCAAAATCTTACCTCAGTTTAGAGTGACAGTCCGCACTAGAATGAGATCCAGCGACTTATCCTCCTCCTACTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCTTCGTCATCACCAAACAAAAGGAGAAAATTAAACCAGACCCATCTCTGGGTAGATGATGATAAAGGTAACACCGAAGAATGA 1356 45.8 MRKAAIMSVSISNCFSNLLCQEDSSGVFSGESPGCSSDLDSPAGVEESIAVFIKNERHFVPDYDCLSRYQSPSLDAAARLDSIAWILKVRISFVLLRFASQSNFFINYQNATLHVTNIAVLYYPTRIRRRLLVLSQIRVDRIGVRISGRWRIRLIYYDYLYPSPSHTAVQAYYGFQPLTAYLSVNYLDRFLCSRRLPIQDDRRAIRVIIAFFVTFNGNRSERTPTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFIGFLISRATEIILSHIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCGGLRKENIIGCYRLMQEILLDNCRRKSPKILPQFRVTVRTRMRSSDLSSSYSSSSSSSSSSSSSSSPNKRRKLNQTHLWVDDDKGNTEE 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4784510 4788810 + Lsi04G005150.1 Lsi04g00515 660564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00515 451 MobiDBLite consensus disorder prediction 436 451 - -
Lsi04g00515 451 SUPERFAMILY Cyclin-like 269 385 IPR036915 -
Lsi04g00515 451 Gene3D - 146 278 - -
Lsi04g00515 451 Pfam Cyclin, N-terminal domain 168 284 IPR006671 -
Lsi04g00515 451 PANTHER CYCLIN-D1-1 29 93 - -
Lsi04g00515 451 PANTHER CYCLIN-D1-1 168 435 - -
Lsi04g00515 451 Pfam Cyclin, C-terminal domain 287 397 IPR004367 -
Lsi04g00515 451 MobiDBLite consensus disorder prediction 407 451 - -
Lsi04g00515 451 CDD CYCLIN 153 277 IPR013763 -
Lsi04g00515 451 Gene3D - 279 420 - -
Lsi04g00515 451 PANTHER CYCLINS 29 93 IPR039361 -
Lsi04g00515 451 SUPERFAMILY Cyclin-like 140 282 IPR036915 -
Lsi04g00515 451 PANTHER CYCLINS 168 435 IPR039361 -
Lsi04g00515 451 SMART Cyclin_C_2 287 422 IPR004367 -
Lsi04g00515 451 MobiDBLite consensus disorder prediction 407 435 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00515 K18810 CYCD1_2_4; cyclin D1/2/4, plant - csv:101209417 424.091
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01730 Lsi-Chr2:22987948 Lsi04g00515 Lsi-Chr4:4784510 2.60E-109 dispersed
Lsi04g00515 Lsi-Chr4:4784510 Lsi04g01489 Lsi-Chr4:22564161 1.51E-35 dispersed
Lsi04g00515 Lsi-Chr4:4784510 Lsi08g01007 Lsi-Chr8:18603898 1.11E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g779 . Blo16g01148 Bda01g02234 . . . . Bma15g00199 Cmo04g01665 . . . . . . . . Bhi07g01711 . . . Hepe10g1669 . . Cla05g02516 Cam05g2700 Cec05g2734 Cco05g2768 Clacu05g2703 Cmu05g2557 Cre05g2672 Cone13ag1015 Cone19ag1009 Cone8ag0642 Cone12ag0627 Lsi04g00515 Csa05g02366 . Cme10g00495 . . Bda07g01568 . . . Bma01g00063 Bma06g00632 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001224 3 2 3 3 4 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 1 4 4 1 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00515 Lsi_Chr04 FPKM 8.994113 7.633169 11.288198 11.035778 18.303318 17.264309 16.874445 15.203594 15.144801 14.1848