Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00522 ATGGCCATAGCCTTCTCCTTCTCGCCTCCTCTGGATCTACACCGCCATCGCCTTCTTCCCCGCCACTTCCTACACCATCGAACTTTTCCCACTCTTCCCATTTCTTCATACCCATTTCCCCTTTTCCTCAAAGCTCAGAATCTCTCCTTCAAAATCTCATCAGCTCCCCTTCATTCCTCGCCCACGACATTGGACTCTTCGCTTCTCGAAGACCCACTTCGGACTGGTCGATTTCTGACCAACGATGAGTTCGAGAAGCTCAAGTTGCTTGGGGATTTTGGGTATTTTCAGGAATTGGAATCTGGGTTCATTTGGGTTCGGGTTATGAGGGATGATGAACTTGATGCCACTGTTGGGTTGCTCGCTGAGTCATTTGCAGAGTCCATGTTCTGGCCTTCTGGCTATATTTCTTTGCTGAGGTTTTTGGTCAAACAGTATTTGATTGAAAGAAGAGCCCTGATGCCACACGCAGCTACACTTATTGGGTTTTATAAAGCCAAGGATGGAGATGAAGAGGAGGCTGAACAGTTGGCTGGCACAGTGGAAGTTTGCTTTGATAAGAGAGGTGCCAATGCATCTCCCCCCACTCCCACACCTCCTAAGGACTCGCCTTACATATGCAACATGACAGTTAAAAAGGAGCTTCGGAGGAGGGGTATTGGGTGGCATCTTTTGAAGGCTGGTGAGGAATTGATTTCACAAATGAGTACCTCAAGGGAGGTGTATCTGCATTGTAGAATGATTGACACAGCTCCTTTCAACATGTATACGAAAGCTGGCTATAGCGTTGTGCAGACAGATACCATAATAATCTTGTTGATGCTGCAGAGGCGCAAGCACTTGATGTGCAAGAAGCTTCCTGCCATGACCATGAGCAGCCCTTCTGAATCAGATGTACCATTTTCTCTTGAAGAATGA 918 47.17 MAIAFSFSPPLDLHRHRLLPRHFLHHRTFPTLPISSYPFPLFLKAQNLSFKISSAPLHSSPTTLDSSLLEDPLRTGRFLTNDEFEKLKLLGDFGYFQELESGFIWVRVMRDDELDATVGLLAESFAESMFWPSGYISLLRFLVKQYLIERRALMPHAATLIGFYKAKDGDEEEAEQLAGTVEVCFDKRGANASPPTPTPPKDSPYICNMTVKKELRRRGIGWHLLKAGEELISQMSTSREVYLHCRMIDTAPFNMYTKAGYSVVQTDTIIILLMLQRRKHLMCKKLPAMTMSSPSESDVPFSLEE 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4829095 4830754 + Lsi04G005220.1 Lsi04g00522 660571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00522 305 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 104 279 IPR000182 GO:0016407
Lsi04g00522 305 CDD NAT_SF 172 244 - -
Lsi04g00522 305 Gene3D - 102 286 - -
Lsi04g00522 305 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 106 266 IPR016181 -
Lsi04g00522 305 Pfam Acetyltransferase (GNAT) family 172 261 IPR000182 GO:0016407
Lsi04g00522 305 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 2 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00522 - - - bhj:120081497 575.089
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g768 . . . . . Bpe10g00827 . Bma15g00197 Cmo04g01658 . . . . . . . Cpe01g01404 . . . . . . . Cla05g02521 Cam05g2706 Cec05g2739 Cco05g2774 Clacu05g2709 Cmu05g2563 Cre05g2677 Cone13ag1020 . . . Lsi04g00522 Csa05g02359 Chy10g00925 Cme10g00501 . . . . . . . . . . . Cma04g01586 . Car04g01632 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012315 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25144 PF00583 Acetyltransf_1 5.60E-07 CL0257 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00522 Lsi_Chr04 FPKM 18.066902 24.082069 286.450409 257.44751 0.308359 0.132778 0.098843 0.16665 0.142057 0.074834