Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00523 ATGGCTTCTGATGGAACGCTTAGCGTAGAGGTGGACGTGAAGTCCGTCGCAGAAAAGTTCTGGAATAGCATGAGGGACTCAACAATCATCTTCCCCAAGGCCTTCCCCCACGATTACAAAAGCATCGAAGTCCTTGAAGGTGACGGGAAAGCAGTCGGTTCCGTTCGCCTCATTACATACTCTGAAGGTTCTTCACTTGTTAAAGAGTCGAAAGAGAGGATCGAGGCCGTGGACGAGGAAAAGAAGATGGTTTCTTACAACGTGATTGAAGGGGATCTTCTAAAGTACTACAAGAGTTTCAAGGGGCATATTGCTGTGAGTCCTAAAGAAGATGGAAGTGGAAGTTCAGTGAAATGGAGCTGTGAGTTTGAGAAGGCGAGTGAGGAGGTTCCTGATCCTCATCTCATTAAGGATTTTGTGGTGAAGAATCTCCTGGAACTCGACGACTATGTTCTGCAGCAGCCATAG 468 47.01 MASDGTLSVEVDVKSVAEKFWNSMRDSTIIFPKAFPHDYKSIEVLEGDGKAVGSVRLITYSEGSSLVKESKERIEAVDEEKKMVSYNVIEGDLLKYYKSFKGHIAVSPKEDGSGSSVKWSCEFEKASEEVPDPHLIKDFVVKNLLELDDYVLQQP 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4832410 4833292 + Lsi04G005230.1 Lsi04g00523 660572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00523 155 CDD Bet_v1-like 5 152 - -
Lsi04g00523 155 SUPERFAMILY Bet v1-like 3 153 - -
Lsi04g00523 155 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lsi04g00523 155 PRINTS Major pollen allergen Bet V1 signature 51 60 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lsi04g00523 155 PRINTS Major pollen allergen Bet V1 signature 68 87 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lsi04g00523 155 PRINTS Major pollen allergen Bet V1 signature 112 128 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lsi04g00523 155 SMART Bet_v_1_2 2 154 IPR000916 GO:0006952
Lsi04g00523 155 PANTHER MLP-LIKE PROTEIN 423 6 152 - -
Lsi04g00523 155 PANTHER MLP-LIKE PROTEIN 423 6 152 - -
Lsi04g00523 155 Pfam Pathogenesis-related protein Bet v 1 family 4 153 IPR000916 GO:0006952
Lsi04g00523 155 Gene3D - 1 154 IPR023393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00523 - - - csv:101211231 276.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00523 Lsi-Chr4:4832410 Lsi05g00313 Lsi-Chr5:4007530 8.26E-23 dispersed
Lsi05g00695 Lsi-Chr5:9216065 Lsi04g00523 Lsi-Chr4:4832410 5.11E-11 dispersed
Lsi08g01078 Lsi-Chr8:19362280 Lsi04g00523 Lsi-Chr4:4832410 7.40E-06 dispersed
Lsi09g01463 Lsi-Chr9:22611219 Lsi04g00523 Lsi-Chr4:4832410 1.54E-08 dispersed
Lsi09g01464 Lsi-Chr9:22616247 Lsi04g00523 Lsi-Chr4:4832410 3.07E-08 dispersed
Lsi11g01560 Lsi-Chr11:23914932 Lsi04g00523 Lsi-Chr4:4832410 6.27E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g766 . . . . . . Bma14g01776 . . . . . . . . . . . . . . . . . Cla05g02522 Cam05g2707 Cec05g2740 Cco05g2778 Clacu05g2710 Cmu05g2564 Cre05g2678 Cone13ag1021 . . . Lsi04g00523 Csa05g02358 Chy10g00924 Cme10g00502 . Blo11g00901 Bda07g01583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010361 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 0 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00523 Lsi_Chr04 FPKM 32.207458 29.317524 3174.605225 3001.749512 1.165783 0.545795 1.871972 1.904529 1.778063 1.508689