Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00524 ATGGAAGTAAAGGGAGAAGGAATATTGGGAGTAGTGATTCCATTTTTGGCGATGGTGAGCATGGAAGGTTGCACAATTGCATTAACAATATTGGCTAAAACAGCCATTACTTATGGAATGTCCACTTTTGTTTTTGTTGTGTATACAAACGCTGTTGCTTCCATCATTCTTCTTCCTTATTCCTTCATCTTTCATTACAACCACAGGATATGTATATCTCAGAACTTAGCATTTTTGGGCCTAAGTTACAGCTCTCCAATTGTTGTATGCGCAATGGGTCTTATGCTTCCAGCTATTTCCTTCATACTCTCAATCCTTCTCGGGAGGATAAAAATTGAGTGGAAAAATCCCAACTTCATTACAAAAGTAGTTGGGACAATTATATCAGTTATAGGAGCTACATGTGAAGAGCTTTACCTCGGCCCAGTTGTACGGCAACATCCATCTTCTTCTTCTACACATTTACAATTCAAACAGAAGCTTTTGGTGTTTACTTCAACAACTGATCGTTGGATTTTTGGTGGCCTTTTATTAGCAGCCGCCACTTTATGTGTCTCAATATGGAACATTGTTCAGTTGGGAGTTGTAAAACAATACTCACAAGTGATGAAAGTTGCCTCATTTTATAGTTTAGTGGGCACATTACTCTCAACAATTGTGGCTTACTTTGTTGTCAATGATTCAAGTGCTTGGACAATCAAATCTAGCTTTGACCTCATTCTCATTATTGCAACAGGAACTTTTAGCGGTTTGATACGAAATCGAGTGCAAATATGGTGCATGCAAAAGAAAGGGCCATATTACGTGCCCATGTTCAAGCCTTTTGGCATTCTTTTTGCTACCTTCTTTGGCGTCACCTTCTTTGGCGACACCTTTCATTACGGAAGTGTGATGGCAGCATTTATAGCTGGAATGGGGTATTTGACAGTAATGTGGGGGCAAATGAACGAAGATCGTGGAGTAGGAGAAGACAAAGATAATGACAAGAATAATGATGATTTGTTGTCTTCAGCTAAAGTTCCACTTCTTGATGAAGAATCAGTAGTGTAA 1050 39.05 MEVKGEGILGVVIPFLAMVSMEGCTIALTILAKTAITYGMSTFVFVVYTNAVASIILLPYSFIFHYNHRICISQNLAFLGLSYSSPIVVCAMGLMLPAISFILSILLGRIKIEWKNPNFITKVVGTIISVIGATCEELYLGPVVRQHPSSSSTHLQFKQKLLVFTSTTDRWIFGGLLLAAATLCVSIWNIVQLGVVKQYSQVMKVASFYSLVGTLLSTIVAYFVVNDSSAWTIKSSFDLILIIATGTFSGLIRNRVQIWCMQKKGPYYVPMFKPFGILFATFFGVTFFGDTFHYGSVMAAFIAGMGYLTVMWGQMNEDRGVGEDKDNDKNNDDLLSSAKVPLLDEESVV 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4839283 4842563 - Lsi04G005240.1 Lsi04g00524 660573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00524 349 PANTHER WAT1-RELATED PROTEIN 10 67 - -
Lsi04g00524 349 PANTHER WAT1-RELATED PROTEIN 70 346 - -
Lsi04g00524 349 PANTHER WAT1-RELATED PROTEIN 70 346 IPR030184 GO:0016021|GO:0022857
Lsi04g00524 349 PANTHER WAT1-RELATED PROTEIN 10 67 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00524 Lsi-Chr4:4839283 Lsi08g01356 Lsi-Chr8:21887221 1.62E-32 dispersed
Lsi02g01544 Lsi-Chr2:21295930 Lsi04g00524 Lsi-Chr4:4839283 1.45E-63 wgd
Lsi03g01415 Lsi-Chr3:25098181 Lsi04g00524 Lsi-Chr4:4839283 5.23E-37 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00524 - - csv:101210157 602.438