Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00530 ATGAATCCCTTCTCCTCAGGGACGCGTCTCAGGGACATGATTCGGGCCATTCGCGCTTGCAAAACGGCAGCTGAGGAACGTGCGGTAATTCGAAAAGAGTGTGCTGCTATTCGAGCTGCAATTGATGAGAATGATCATGACTATAGGCATCGAAACCTTGCGAAGCTCATGTTCATTCACATGCTTGGTTATCCCACGCACTTTGGTCAAATGGAATGCTTGAAGTTGATTGCATCCACTGGCTTCCCAGAAAAGAGAATTGGGTATCTTGGCCTCATGTTACTTCTCGATGAAAGACAAGAAGTTCTAATGTTGGTCACAAACTCATTAAAACAAGATCTCAACCACTCAAACCAGTATATCGTAGGACTTGCTCTTTGTGCTTTAGGAAATATTTGTTCAGCTGAAATGGCTCGTGATCTTGCACCAGAAGTTGAAAGACTGTTACAGTTTCGAGATCCAAACATTAGGAAGAAGGCAGCTTTGTGTTCAATTAGGATCATAAGGAAAGTACCGGACCTTGCAGAAAATTTTGTTAACCCTGCCGCCTCCTTACTGAAAGAAAAGCACCATGGGGTTATGATAACAGGAGTTCAACTGTGTACAGAGCTTTGCAAACACAGTCCAGAAGCCCTTGAATATTTTCGGAAGAAGTCAACAGAGGCCATAGTCAAGACACTAAAGGATTTGGTTAATAGTCCATATGCCCCTGAGTATGATATTGCTGGAATAACGGACCCATTTCTCCATATCCGGATACTTCAATTTTTGCGTGTCTTGGGCCAGGGAGATGCAGATGCTAGTGACTGCATGAATGATATACTTGCACAGGTGGCAACAAAAACTGAATCAAACAAAAATGCAGGGAATGCTATTCTATACGAATGTGTTGAAACTATTATGAGTATAGAAGATAGTGGCGGCTTACGTGTACTTGCTATCAATATCTTGGGAAGATTCTTGTCTAATCGTGATAACAATATCAGATATGTAGCATTGAACATGCTTATGAAGGCTATCACAGTAGATGGTCAAGCAGTGCAGAGACATCGGACAACGATCTTGGAATGTGTAAAGGATTCAGATGCTTCAATCCGGAAAAGGGCTCTTGAACTTGTTTACCTTCTAGTAAATGAGAGCAACGTCAAGCCTCTGACCAAAGAGCTTATTGAATACCTAGAAGTTGCTGATCAAGAATTTAAGGGAGATCTTACTGCAAAAATTTGCTCAATTGTTGCAAAGTACTCCCCAGAGAAAATATGGTACATTGATCAGATGCTGAAGGTTCTCTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGCATGCCCTCATTGTCGTGATAAGCAACGCATCTGACCTCCATGGGTATACTGTAAGGGCCTTGTACAGAGCATTTCAGATATCAAGTGAGCAGGAAAGTCTTGTTCGAGTGGCAGTTTGGTGCATTGGTGAATATGGCGACATGTTGGTCAATAATATTGGAATGCTTGATATAGAGGATCCCATAGTTGTAACAGAATCTGATGCTGTGGATGTTGCGGAAACTGCTATTAAACGCCAAGATTCAGGTCTTACCACCAAATCAATGGCCATGATTGCTTTGCTGAAGCTCTCTTCTCGTTTCCCATCATGTTCAGAGAGGATCAACCATTTAATTGTTCAATATAAGGAAAGCCTCGTGCTTGAATTGCAGCAAAGATCCATCGAATTCAATTCCATCATTGCAAGTCATCAGAATATGAGGTCTGTGTTGGTTGAAAGAATGCCAGTTTTGGATGAGGCAACGTTCATTGGAAAAAGGGCTGGTACTATTCCAGCATCAGTATCGACTTCCAATGGGGCTGCAATTAACCTTCCAAATGGAGTTTCCAAATCTGCTGCTCCTCTCGTTGATTTACTTGACTTAAGTTCGGATGATGTTCCTGTGCCTAGCTCTTCTGGTAGTGATTTTATTCAGGATCTTCTTGGGCTTGATTTGTCCGCAGCTCCAGAGCAATCTGGAAGCAATCCAGCTCCAAAAAGTGGAACTGATGTTCTATTGGATCTTTTGTCTATTGGAACAACACCACCTATACAGAGTACTGCATCTGCAACTGACATATTATCCAATCAAGAAAAATCACCTACTTCTCAATTGGATGGACTCTCCTCTCTTCCTTCTCTTTCAGCAAGCAAATCTCCTGCTGCTGTATCCGCTCCTACAATTGATTTGTTGGGTGGATTGGCCCCTAACGTGGCAAGCGCAGGTGATGAGAATGGTTCAGTTTATCCATCTATAGTTGCATACGAGAGCGGATCACTGAGAATAACTTTTGACTTCTCCAAGACAGCTGGGAACCCACAGACAACGTTGATCCTTGCCACATTTAAAAATTTATCTCCTAATATCTACTCTAATTTTATTTTTCAGGCAGCAGTTCCAAAGTTTCTTCAACTGCACTTAAATCCGGCTAGTGGTAGTACTTTGCCTGGAAGTGGTAATGGGTCTATCACACAAAAGTTGAGGGTGACTAATAGCCAATATGGAAAGAAACATCTTGTCATGCGCCTAAGGATAGCGTACAAGGTGGACGACAAAGATATTTTGGAGGAGGGCCAAGTCAGTAATTTCCCTCGTAACTTGTGA 2631 42.15 MNPFSSGTRLRDMIRAIRACKTAAEERAVIRKECAAIRAAIDENDHDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASTGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIRKVPDLAENFVNPAASLLKEKHHGVMITGVQLCTELCKHSPEALEYFRKKSTEAIVKTLKDLVNSPYAPEYDIAGITDPFLHIRILQFLRVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDSGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDGQAVQRHRTTILECVKDSDASIRKRALELVYLLVNESNVKPLTKELIEYLEVADQEFKGDLTAKICSIVAKYSPEKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRALYRAFQISSEQESLVRVAVWCIGEYGDMLVNNIGMLDIEDPIVVTESDAVDVAETAIKRQDSGLTTKSMAMIALLKLSSRFPSCSERINHLIVQYKESLVLELQQRSIEFNSIIASHQNMRSVLVERMPVLDEATFIGKRAGTIPASVSTSNGAAINLPNGVSKSAAPLVDLLDLSSDDVPVPSSSGSDFIQDLLGLDLSAAPEQSGSNPAPKSGTDVLLDLLSIGTTPPIQSTASATDILSNQEKSPTSQLDGLSSLPSLSASKSPAAVSAPTIDLLGGLAPNVASAGDENGSVYPSIVAYESGSLRITFDFSKTAGNPQTTLILATFKNLSPNIYSNFIFQAAVPKFLQLHLNPASGSTLPGSGNGSITQKLRVTNSQYGKKHLVMRLRIAYKVDDKDILEEGQVSNFPRNL 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4882703 4897843 - Lsi04G005300.1 Lsi04g00530 660579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00530 876 SUPERFAMILY ARM repeat 25 591 IPR016024 -
Lsi04g00530 876 SUPERFAMILY Clathrin adaptor appendage domain 712 875 IPR013041 -
Lsi04g00530 876 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 5 876 - -
Lsi04g00530 876 MobiDBLite consensus disorder prediction 696 720 - -
Lsi04g00530 876 Gene3D - 2 594 IPR011989 -
Lsi04g00530 876 Gene3D - 748 875 - -
Lsi04g00530 876 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 756 873 IPR008153 -
Lsi04g00530 876 PIRSF AP1_gamma 6 876 IPR017107 GO:0005794|GO:0016192|GO:0030121
Lsi04g00530 876 Pfam Adaptin N terminal region 26 578 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lsi04g00530 876 Pfam Adaptin C-terminal domain 759 873 IPR008152 GO:0006886|GO:0016192
Lsi04g00530 876 SMART alpha_adaptinc2 753 873 IPR008152 GO:0006886|GO:0016192
Lsi04g00530 876 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 5 876 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00530 K12391 AP1G1; AP-1 complex subunit gamma-1 - csv:101212445 1596.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00189 Lsi-Chr2:1609515 Lsi04g00530 Lsi-Chr4:4882703 4.23E-29 dispersed
Lsi04g00530 Lsi-Chr4:4882703 Lsi10g01201 Lsi-Chr10:16279575 4.55E-63 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005001 2 3 2 3 1 1 2 1 1 1 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00530 Lsi_Chr04 FPKM 2.433547 2.874242 0.337045 0.0 1.713703 2.038806 2.350298 0.0 0.0 0.0