Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00531 ATGGGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCCATTGTCTTCAGATCTGGATTGGATTAAAATTGTAGAGCCAGTGATGAGATTATATACAGAAGCAACAGATGGCTCATGCATAGAATCCAAAGAGAGTGCTTTAGTCTGGCATCATCAAGATGCTGATTCTGACTTCGGATCCTGTCAAGGCAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAACGAACCAGCCGTTGTTAAAAGGGGCCAACATATTGTTGAAGTGAAGCCACAGGGAGTAAGCAAAGGGTTAGTCGCAGAAAAGGTTCTCTCGAGAATGGTAGATAGTGGAAGACCACCTGATTTCGTGATGTGCATTGGAGATGATAGATCAGATGAAGATATGTTTGAGAGCATATTAAGCACAGTCTCCAGTCCCTCACTGCCTTCCGCTCCAGAAATTTTCGCCTGTACCGTTGGGCGAAAGCCAAGCAAGGCCAAGTTTTACCTTGATGATACTTCTGACGTCGTGAAATTGCTGCAATGCCTTGCCTCTTCGTCATGTCCAAGACCTCGGCAACTACCGCAGATGCGTATGTTGAAAAGGGTTGCCATAAATGCAAATACAAAATGTTAG 621 45.09 MGWGGTSEWETSPLSSDLDWIKIVEPVMRLYTEATDGSCIESKESALVWHHQDADSDFGSCQGKELLDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQCLASSSCPRPRQLPQMRMLKRVAINANTKC 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4900865 4907283 - Lsi04G005310.1 Lsi04g00531 660580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00531 206 SUPERFAMILY HAD-like 6 179 IPR036412 -
Lsi04g00531 206 Gene3D - 61 187 IPR023214 -
Lsi04g00531 206 TIGRFAM T6PP: trehalose-phosphatase 19 179 IPR003337 GO:0003824|GO:0005992
Lsi04g00531 206 Pfam Trehalose-phosphatase 5 169 IPR003337 GO:0003824|GO:0005992
Lsi04g00531 206 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 6 188 - -
Lsi04g00531 206 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 6 188 IPR001830 GO:0003824|GO:0005992
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00531 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101212688 383.259
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00531 Lsi-Chr4:4900865 Lsi07g01179 Lsi-Chr7:17303864 4.52E-73 dispersed
Lsi11g01715 Lsi-Chr11:25256976 Lsi04g00531 Lsi-Chr4:4900865 2.99E-82 transposed
Lsi04g00531 Lsi-Chr4:4900865 Lsi06g01540 Lsi-Chr6:25744451 3.44E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g745 . . . . . Bpe10g00831 Bma14g01784 Bma15g00201 . . . . . . . . Cpe01g01518 . . . . . . . Cla05g02526 Cam05g2715 Cec05g2747 Cco05g2787 Clacu05g2718 Cmu05g2572 Cre05g2685 Cone13ag1029 Cone19ag1019 . . Lsi04g00531 Csa05g02351 Chy10g00918 Cme10g00508 Blo06g00869 Blo11g00904 Bda07g01593 . . . . . . . . Cma04g01714 . Car04g01747 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00174 . 45 468 Trehalose Biosynthesis Gene Families AT4G24040 57.2 1.2e-140 497.3
Lsi01g00224 . 1 846 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1348.6
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.5 0.0e+00 1152.1
Lsi11g01716 . 4 644 Trehalose Biosynthesis Gene Families AT1G06410 77.2 2.8e-310 1061.2
Lsi06g01540 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 1.7e-304 1042.0
Lsi11g01715 . 5 183 Trehalose Biosynthesis Gene Families AT1G06410 80.4 1.9e-77 287.7
Lsi04g00531 . 1 182 Trehalose Biosynthesis Gene Families AT1G06410 62.6 1.1e-61 235.3
Lsi04g01978 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.0e-248 856.3
Lsi02g00848 . 94 714 Trehalose Biosynthesis Gene Families AT1G16980 61.4 9.9e-231 796.6
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1215.7
Lsi07g01179 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1108.2
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G23870 61.2 0.0e+00 1098.2
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT1G23870 61.3 1.3e-251 866.3
Lsi04g00531 . 3 188 Trehalose Biosynthesis Gene Families AT1G23870 73.0 2.2e-73 274.2
Lsi11g01715 . 3 184 Trehalose Biosynthesis Gene Families AT1G23870 59.9 8.5e-57 219.2
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1232.6
Lsi07g01179 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.8 0.0e+00 1079.7
Lsi01g00224 . 1 851 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1078.5
Lsi11g01716 . 6 642 Trehalose Biosynthesis Gene Families AT1G60140 60.1 2.6e-239 825.5
Lsi04g00531 . 3 194 Trehalose Biosynthesis Gene Families AT1G60140 69.8 7.6e-74 275.8
Lsi11g01715 . 3 187 Trehalose Biosynthesis Gene Families AT1G60140 61.1 3.7e-60 230.3
Lsi07g01179 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.7 0.0e+00 1270.4
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 64.3 0.0e+00 1161.4
Lsi06g01540 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1095.9
Lsi11g01716 . 6 647 Trehalose Biosynthesis Gene Families AT1G68020 63.1 2.1e-257 885.6
Lsi11g01715 . 9 186 Trehalose Biosynthesis Gene Families AT1G68020 65.2 1.0e-62 238.8
Lsi04g00531 . 8 180 Trehalose Biosynthesis Gene Families AT1G68020 66.5 1.0e-62 238.8
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.4 0.0e+00 1105.5
Lsi01g00224 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 57.1 7.3e-292 1000.0
Lsi07g01179 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 3.9e-285 977.6
Lsi11g01716 . 6 645 Trehalose Biosynthesis Gene Families AT1G70290 57.8 1.0e-221 766.9
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT1G70290 72.8 6.8e-72 269.2
Lsi11g01715 . 3 193 Trehalose Biosynthesis Gene Families AT1G70290 59.4 9.5e-58 222.2
Lsi04g01978 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 79.4 0.0e+00 1479.2
Lsi02g00848 . 8 950 Trehalose Biosynthesis Gene Families AT1G78580 71.0 0.0e+00 1322.4
Lsi06g01540 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.2 1.4e-301 1032.3
Lsi01g00224 . 1 843 Trehalose Biosynthesis Gene Families AT2G18700 58.9 1.0e-299 1026.2
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.4 9.3e-298 1019.6
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT2G18700 57.1 2.2e-230 795.8
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT2G18700 65.2 1.1e-61 235.3
Lsi11g01715 . 3 183 Trehalose Biosynthesis Gene Families AT2G18700 61.5 2.6e-53 207.6
Lsi07g01179 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.3 0.0e+00 1379.8
Lsi01g00224 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 67.0 0.0e+00 1182.5
Lsi06g01540 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1107.0
Lsi11g01716 . 4 642 Trehalose Biosynthesis Gene Families AT4G17770 63.7 2.9e-259 891.7
Lsi11g01715 . 3 191 Trehalose Biosynthesis Gene Families AT4G17770 60.3 2.1e-63 241.1
Lsi04g00531 . 7 182 Trehalose Biosynthesis Gene Families AT4G17770 61.9 3.0e-62 237.3
Lsi04g01978 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.2e-304 1042.3
Lsi02g00848 . 98 944 Trehalose Biosynthesis Gene Families AT4G27550 57.4 1.4e-276 949.1
Lsi04g01978 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 79.4 0.0e+00 1479.2
Lsi02g00848 . 8 950 Trehalose Biosynthesis Gene Families AT1G78580 71.0 0.0e+00 1322.4
Lsi04g01978 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.0e-248 856.3
Lsi02g00848 . 94 714 Trehalose Biosynthesis Gene Families AT1G16980 61.4 9.9e-231 796.6
Lsi04g01978 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 1.0e-194 677.2
Lsi02g00848 . 99 629 Trehalose Biosynthesis Gene Families AT1G17000 57.9 2.7e-179 625.9
Lsi04g01978 . 93 925 Trehalose Biosynthesis Gene Families AT4G27550 62.7 1.2e-304 1042.3
Lsi02g00848 . 98 944 Trehalose Biosynthesis Gene Families AT4G27550 57.4 1.4e-276 949.1
Lsi07g01179 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 79.3 0.0e+00 1379.8
Lsi01g00224 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 67.0 0.0e+00 1182.5
Lsi06g01540 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1107.0
Lsi11g01716 . 4 642 Trehalose Biosynthesis Gene Families AT4G17770 63.7 2.9e-259 891.7
Lsi11g01715 . 3 191 Trehalose Biosynthesis Gene Families AT4G17770 60.3 2.1e-63 241.1
Lsi04g00531 . 7 182 Trehalose Biosynthesis Gene Families AT4G17770 61.9 3.0e-62 237.3
Lsi07g01179 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 71.7 0.0e+00 1270.4
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G68020 64.3 0.0e+00 1161.4
Lsi06g01540 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1095.9
Lsi11g01716 . 6 647 Trehalose Biosynthesis Gene Families AT1G68020 63.1 2.1e-257 885.6
Lsi11g01715 . 9 186 Trehalose Biosynthesis Gene Families AT1G68020 65.2 1.0e-62 238.8
Lsi04g00531 . 8 180 Trehalose Biosynthesis Gene Families AT1G68020 66.5 1.0e-62 238.8
Lsi01g00224 . 1 846 Trehalose Biosynthesis Gene Families AT1G06410 75.4 0.0e+00 1348.6
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT1G06410 66.5 0.0e+00 1152.1
Lsi11g01716 . 4 644 Trehalose Biosynthesis Gene Families AT1G06410 77.2 2.8e-310 1061.2
Lsi06g01540 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.0 1.7e-304 1042.0
Lsi11g01715 . 5 183 Trehalose Biosynthesis Gene Families AT1G06410 80.4 1.9e-77 287.7
Lsi04g00531 . 1 182 Trehalose Biosynthesis Gene Families AT1G06410 62.6 1.1e-61 235.3
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 63.4 0.0e+00 1105.5
Lsi01g00224 . 1 850 Trehalose Biosynthesis Gene Families AT1G70290 57.1 7.3e-292 1000.0
Lsi07g01179 . 1 853 Trehalose Biosynthesis Gene Families AT1G70290 56.5 3.9e-285 977.6
Lsi11g01716 . 6 645 Trehalose Biosynthesis Gene Families AT1G70290 57.8 1.0e-221 766.9
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT1G70290 72.8 6.8e-72 269.2
Lsi11g01715 . 3 193 Trehalose Biosynthesis Gene Families AT1G70290 59.4 9.5e-58 222.2
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G23870 66.8 0.0e+00 1215.7
Lsi07g01179 . 1 843 Trehalose Biosynthesis Gene Families AT1G23870 62.6 0.0e+00 1108.2
Lsi01g00224 . 1 847 Trehalose Biosynthesis Gene Families AT1G23870 61.2 0.0e+00 1098.2
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT1G23870 61.3 1.3e-251 866.3
Lsi04g00531 . 3 188 Trehalose Biosynthesis Gene Families AT1G23870 73.0 2.2e-73 274.2
Lsi11g01715 . 3 184 Trehalose Biosynthesis Gene Families AT1G23870 59.9 8.5e-57 219.2
Lsi06g01540 . 1 852 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1232.6
Lsi07g01179 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 59.8 0.0e+00 1079.7
Lsi01g00224 . 1 851 Trehalose Biosynthesis Gene Families AT1G60140 60.6 0.0e+00 1078.5
Lsi11g01716 . 6 642 Trehalose Biosynthesis Gene Families AT1G60140 60.1 2.6e-239 825.5
Lsi04g00531 . 3 194 Trehalose Biosynthesis Gene Families AT1G60140 69.8 7.6e-74 275.8
Lsi11g01715 . 3 187 Trehalose Biosynthesis Gene Families AT1G60140 61.1 3.7e-60 230.3
Lsi06g01540 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 60.2 1.4e-301 1032.3
Lsi01g00224 . 1 843 Trehalose Biosynthesis Gene Families AT2G18700 58.9 1.0e-299 1026.2
Lsi07g01179 . 1 844 Trehalose Biosynthesis Gene Families AT2G18700 58.4 9.3e-298 1019.6
Lsi11g01716 . 5 645 Trehalose Biosynthesis Gene Families AT2G18700 57.1 2.2e-230 795.8
Lsi04g00531 . 3 182 Trehalose Biosynthesis Gene Families AT2G18700 65.2 1.1e-61 235.3
Lsi11g01715 . 3 183 Trehalose Biosynthesis Gene Families AT2G18700 61.5 2.6e-53 207.6
Lsi09g00174 . 45 468 Trehalose Biosynthesis Gene Families AT4G24040 57.2 1.2e-140 497.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025731 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00531 Lsi_Chr04 FPKM 11.623578 10.942306 13.667761 12.454199 8.440859 7.524831 9.318048 12.246839 11.405145 14.619126