Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi04g00531 | ATGGGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCCATTGTCTTCAGATCTGGATTGGATTAAAATTGTAGAGCCAGTGATGAGATTATATACAGAAGCAACAGATGGCTCATGCATAGAATCCAAAGAGAGTGCTTTAGTCTGGCATCATCAAGATGCTGATTCTGACTTCGGATCCTGTCAAGGCAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAACGAACCAGCCGTTGTTAAAAGGGGCCAACATATTGTTGAAGTGAAGCCACAGGGAGTAAGCAAAGGGTTAGTCGCAGAAAAGGTTCTCTCGAGAATGGTAGATAGTGGAAGACCACCTGATTTCGTGATGTGCATTGGAGATGATAGATCAGATGAAGATATGTTTGAGAGCATATTAAGCACAGTCTCCAGTCCCTCACTGCCTTCCGCTCCAGAAATTTTCGCCTGTACCGTTGGGCGAAAGCCAAGCAAGGCCAAGTTTTACCTTGATGATACTTCTGACGTCGTGAAATTGCTGCAATGCCTTGCCTCTTCGTCATGTCCAAGACCTCGGCAACTACCGCAGATGCGTATGTTGAAAAGGGTTGCCATAAATGCAAATACAAAATGTTAG | 621 | 45.09 | MGWGGTSEWETSPLSSDLDWIKIVEPVMRLYTEATDGSCIESKESALVWHHQDADSDFGSCQGKELLDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESILSTVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQCLASSSCPRPRQLPQMRMLKRVAINANTKC | 206 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 4900865 | 4907283 | - | Lsi04G005310.1 | Lsi04g00531 | 660580 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi04g00531 | 206 | SUPERFAMILY | HAD-like | 6 | 179 | IPR036412 | - | |
| Lsi04g00531 | 206 | Gene3D | - | 61 | 187 | IPR023214 | - | |
| Lsi04g00531 | 206 | TIGRFAM | T6PP: trehalose-phosphatase | 19 | 179 | IPR003337 | GO:0003824|GO:0005992 | |
| Lsi04g00531 | 206 | Pfam | Trehalose-phosphatase | 5 | 169 | IPR003337 | GO:0003824|GO:0005992 | |
| Lsi04g00531 | 206 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED | 6 | 188 | - | - | |
| Lsi04g00531 | 206 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 6 | 188 | IPR001830 | GO:0003824|GO:0005992 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00531 | Lsi-Chr4:4900865 | Lsi07g01179 | Lsi-Chr7:17303864 | 4.52E-73 | dispersed | |
| Lsi11g01715 | Lsi-Chr11:25256976 | Lsi04g00531 | Lsi-Chr4:4900865 | 2.99E-82 | transposed | |
| Lsi04g00531 | Lsi-Chr4:4900865 | Lsi06g01540 | Lsi-Chr6:25744451 | 3.44E-83 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi04g00531 | K16055 | - | csv:101212688 | 383.259 |