Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00532 AAAGATTCATGGAAGACGGTTCTGATGATGGCTTATCAGAGTCTTGGTGTTGTTTATGGGGAGTTGGGCACTTCGCCTTTATATGTCTATAGGAACACTTTTGCGGAAGAAGATATCAATCACACCCAGAGCAACGATGAGATTTATGGGGTTTTGTCCTTTGTTTTCTGGACTCTCACCATTGTTCCTCTGCTCAAGTACATATTTATCGTTCTTAAAGCTGATGATAATGGGGAGGGAGGGACATTTGCTCTGTATTCGTTACTGTGTCGACACGCCCGAGTTAGCTCATTGCCTAATACCCAGTTGGCTGATTCTGAACTCACTGAGTACAAGATGAATGTCCTTGGTCCACCATCTCAACAAAGTTTTGGATTCAAACTCAAATCAGCATTAGAAAAGCGTCGGGTTCTGCAGAAATTCTTGCTGGTTCTTGCTTTAATTGGGACTTGCATGGTGATAGGGGATGGCATCTTAACACCGGCTATTTCTGATTGGATTTCTTTCGGCGGTTTCTGGTCTCGAACATACCATGGCGAAAGAGCATCACCAATATATAGTAATCCCAATTGCATGCATCGTACTGATATGCTTGTTTGCTCTGCAACACTACGGCACGCACAGTATCGGCTTCTTGTTTGCTCCCATAGTGATAATTTGGCTATTGTTGCCATTGGCTTGTACAATATTATTCACTGGAATCCGGGTGTTTATAGAGCAATTTCTCCTCGCTACATGTTCCAATTTCTTAAGAAAACCCAAAAAGGAGGTTGGATGTCACTTGGTGGAATAATGTTGTGCATTACAGGTTCAGAGGCGATGTTTGCTGACCTTGGGCATTTTTCTCAGTTGTCAATTAAGCTTGCTTTCACTTTTATGGTTTATCCGTCTCTCCTCCTAGCATACATGGGGCAAGCTGCCTATCTGTCTCAACATCATCCTCCAAATGATCATTCAATTGGGTTTTATGTATCTGTTCCTGAGAAATTGAGGTGGCCTGTCCTTATAATTGCTGTGCTTGCTGCAGTAGTAGGAAGCCAGGCTATAATCACCGGAACTTTCTCGATTATAAAGCAGTGCTCTGCTTTGGGTTGCTTTCCTCGAGTCAAAATTATTCATACGTCCTCAAAAGTTCACGGTCAGATCTATATCCCAGAGGTCAATTGGATATTGATGCTGTTGTGCTTGGCTGTTACCTTAGGTTTCAGAGACACAAAGCGCTTGGGCCATGCCTCAGGTTTGGCAGTGATAACTGTGATGCTTGTTACTACATGCTTGATGTCGCTCGTTATCGTTCTGTGCTGGCACCGAAGTGTATTTCTTGCAATAGGCTTCATCTTCTTCTTTGGCACCATTGAATCTCTTTACTTCTCAGCTTCTCTTATAAAATTCCTTGAAGGAGCTTGGGTTCCCATCGCAATTTCTCTTGTATTCCTGATCGTTATGTATGTCTGGCACTATGGTACTCTTAAGAAGTTTGAATTTGACATCCAAAACAAGGTTTCTATTAACTGGCTACTTAGTTTGGGTTGCAACTTAGGCATTGTAAGAGTCCGTGGGATTGGCGTCATACAGACAGAGCTTGTTACGGGTATCCCGGGTATCTTCACCCACTTTGTCACCAATATTCCCGCCTTCCATCAAGTGCTTGTTTTCCTTTGTATCAAATATGTCCCAGTGCCACATGTTAGACCACAGGAACGGTTTCTAATTGGTCGTATTGATACGAGCGAATACAGACTCTATCGGTGCATTGTGCGATATGGGTATCGAGATGTTCACAAAGACGATGTAGAGTTCGAGAATGATCTTATATGCAGCATAGCAGAGTTTATAAGGTCAGGGACTGCAGTGTCTGGTGATTCTAAATCGGACTTTGATAAATATGGTGGTGAAAAGATGTCAGTCGTCGGGACATCTTCTACCCATGAAGATAGGGTTCAGATGGCCGAGACCGATAATGAAGAAGACTCTGAAGAACTGTACCAAGCTTCAGATACCAGGGAAATAAGGTCACCGGCTCCAGTTCAGTTGAGAAAAAGAGTACGCTTCATTGTACCCGAGAGCCCGAAAATCAACACTGATGCAATGGAAGAATTACAAGAGCTAATGGAAGCAAGAGAAGGAGGAGTAGCTTACATATTAGGACGGTCACACATGAAAGCAAAACAAGGATCGAGCACACTGAAAAGGGTGTCGATCGACTTCATTTACGAGTTCTTGAGGAAGAACAGCAGAGAAGCCGAGTTCCCAGTAGGTTTATCACATTCATCATCAACCCTTGAGGTGGGTATGATGTATCTTGTTTAG 2310 43.12 KDSWKTVLMMAYQSLGVVYGELGTSPLYVYRNTFAEEDINHTQSNDEIYGVLSFVFWTLTIVPLLKYIFIVLKADDNGEGGTFALYSLLCRHARVSSLPNTQLADSELTEYKMNVLGPPSQQSFGFKLKSALEKRRVLQKFLLVLALIGTCMVIGDGILTPAISDWISFGGFWSRTYHGERASPIYSNPNCMHRTDMLVCSATLRHAQYRLLVCSHSDNLAIVAIGLYNIIHWNPGVYRAISPRYMFQFLKKTQKGGWMSLGGIMLCITGSEAMFADLGHFSQLSIKLAFTFMVYPSLLLAYMGQAAYLSQHHPPNDHSIGFYVSVPEKLRWPVLIIAVLAAVVGSQAIITGTFSIIKQCSALGCFPRVKIIHTSSKVHGQIYIPEVNWILMLLCLAVTLGFRDTKRLGHASGLAVITVMLVTTCLMSLVIVLCWHRSVFLAIGFIFFFGTIESLYFSASLIKFLEGAWVPIAISLVFLIVMYVWHYGTLKKFEFDIQNKVSINWLLSLGCNLGIVRVRGIGVIQTELVTGIPGIFTHFVTNIPAFHQVLVFLCIKYVPVPHVRPQERFLIGRIDTSEYRLYRCIVRYGYRDVHKDDVEFENDLICSIAEFIRSGTAVSGDSKSDFDKYGGEKMSVVGTSSTHEDRVQMAETDNEEDSEELYQASDTREIRSPAPVQLRKRVRFIVPESPKINTDAMEELQELMEAREGGVAYILGRSHMKAKQGSSTLKRVSIDFIYEFLRKNSREAEFPVGLSHSSSTLEVGMMYLV 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4919570 4924398 - Lsi04G005320.1 Lsi04g00532 660581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00532 769 Pfam K+ potassium transporter 12 164 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi04g00532 769 Pfam K+ potassium transporter 221 592 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi04g00532 769 TIGRFAM kup: potassium uptake protein 221 767 IPR003855 GO:0015079|GO:0016020|GO:0071805
Lsi04g00532 769 MobiDBLite consensus disorder prediction 635 668 - -
Lsi04g00532 769 PANTHER POTASSIUM TRANSPORTER 6 1 768 - -
Lsi04g00532 769 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 768 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00532 Lsi-Chr4:4919570 Lsi04g01031 Lsi-Chr4:11824195 0 dispersed
Lsi02g01554 Lsi-Chr2:21392597 Lsi04g00532 Lsi-Chr4:4919570 0 wgd
Lsi03g01412 Lsi-Chr3:25070978 Lsi04g00532 Lsi-Chr4:4919570 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00532 K03549 - csv:101212925 1327.77