Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00535 ATGGCTGCGGAGTATTCCGTCGGGTTGGTGGCCGATGCGGCGGCGGCGAAGAAACCTGAGATTGAGAATGGGGATTCCGCCTCACACCCCGATTGTATTTCCTCTGTAATTCCTGGATGGTTTTCTGAAATTAGCCCAATGTGGCCTGGAGAGGCTCACTCCTTGAAGGTGGAGAAGGTTTTGTTTCAAGGGAAGTCTGATTATCAGAACGTTTTGGTCTTTCAGTCATCAACTTATGGGAAGGTTCTGGTTTTGGATGGGGTGATTCAGCTTACAGAGAGAGATGAATGTGCTTACCAAGAGATGATCACCCACCTTCCACTTTGCTCAATTCCAAACCCCAAAAAGGTTCTAGTTATTGGTGGAGGAGATGGCGGTGTCTTGCGAGAGGTGGCTCGTCATTCATCTGTTGAGCAGATTGATATCTGTGAAATTGACAAGATGGTAGTTGATGTTTCCAAAGAATTTTTCCCTCGTGTAGCTGTTGGGTATGAGGATCCTCGCGTCACTCTTCATGTTGGTGATGGCGTTGCTTTTCTGAAGGCTGTTCCTGAAGGCACTTATGATGCAATTATAGTGGATTCTTCTGATCCTATCGGTCCTGCACAAGAGCTTTTTGAGAAGCCTTTTTTTGCTTCAGTTGCCAAAGCTCTTCGACCGGGAGGTGTTGTTTGTACTCAGGCAGAGAGCATCTGGCTTCACATGCATATCATTGAAGACATTGTTACAAACTGCCGCCAAATATTCAAAGGCTCTGTCAACTATGCATGGACTACAGTTCCTACATATCCAAGCGGAGTAATTGGGTTTATGCTATGCTCAACTGAGGGACCTCCTGTTGATTTCAAGCATCCAGTCAACCCAGTAGAGGTGAATGGCATCGACACTGCGAAGAGTCCGCTCAAGTTTTACAACTCCGAGGTGAGATCTGTTGTCATCCTCAAATTTTGTTTATGTTACGTTGATGTACTTCCATTAACTTGA 984 45.73 MAAEYSVGLVADAAAAKKPEIENGDSASHPDCISSVIPGWFSEISPMWPGEAHSLKVEKVLFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVSKEFFPRVAVGYEDPRVTLHVGDGVAFLKAVPEGTYDAIIVDSSDPIGPAQELFEKPFFASVAKALRPGGVVCTQAESIWLHMHIIEDIVTNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPVNPVEVNGIDTAKSPLKFYNSEVRSVVILKFCLCYVDVLPLT 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4946208 4948780 - Lsi04G005350.1 Lsi04g00535 660584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00535 327 PANTHER SPERMIDINE SYNTHASE-RELATED 22 318 - -
Lsi04g00535 327 Pfam Spermine/spermidine synthase domain 96 283 - -
Lsi04g00535 327 Gene3D Vaccinia Virus protein VP39 91 317 IPR029063 -
Lsi04g00535 327 Gene3D Spermidine synthase, tetramerisation domain 31 90 IPR037163 -
Lsi04g00535 327 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 36 307 IPR029063 -
Lsi04g00535 327 Hamap Polyamine aminopropyltransferase [speE]. 39 325 IPR001045 GO:0003824
Lsi04g00535 327 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 38 275 IPR030374 -
Lsi04g00535 327 PIRSF Spermidine_synth 28 320 IPR030668 GO:0006595
Lsi04g00535 327 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 117 130 IPR030373 -
Lsi04g00535 327 PANTHER SPERMIDINE/SPERMINE SYNTHASE 22 318 IPR001045 GO:0003824
Lsi04g00535 327 Pfam Spermidine synthase tetramerisation domain 39 93 IPR035246 -
Lsi04g00535 327 TIGRFAM speE: spermidine synthase 40 310 IPR001045 GO:0003824
Lsi04g00535 327 CDD AdoMet_MTases 116 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00535 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - csv:101213410 558.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00535 Lsi-Chr4:4946208 Lsi09g00028 Lsi-Chr9:272284 5.67E-145 dispersed
Lsi05g01427 Lsi-Chr5:22184118 Lsi04g00535 Lsi-Chr4:4946208 3.81E-36 transposed
Lsi11g00166 Lsi-Chr11:1770665 Lsi04g00535 Lsi-Chr4:4946208 7.01E-32 transposed
Lsi02g00359 Lsi-Chr2:3061914 Lsi04g00535 Lsi-Chr4:4946208 2.09E-103 wgd
Lsi04g00535 Lsi-Chr4:4946208 Lsi06g01542 Lsi-Chr6:25771974 1.41E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00535 Lsi_Chr04 FPKM 4.226197 3.958699 0.0 0.0 0.0 0.449385 0.0 0.0 0.0 0.0