Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00536 ATGTATGCTACCCTGGCTGATTCTTTTCTAGCAGATCTTGATGAACTCTCTGATGAAGACAAGTTTCAGGGTGAAGAAGATGCCGATGCTGAAAATATGGAAGAGGATATTGATGGGGACCTTGCCGACCTAGAAAGCCTAAATTATGATGATCTGGACAGTGTATCAAAATTGCAGAAAACACAAAGATACAATGATATTATGCAGAAAGTGGAAGATGCATTGCAGACAGATTCTAATATCTCAAATCAGGGTATTGTATTGGAAGATGATCCTGAGTACCAATTGATTGTAGAGTGTAACGCCTTGTCAGTGGATATTGAGAATGAAATTATTATTATTCACAATTTTATACGTGATAAATATCGACTGAAATTTCCAGAGCTTGAATCACTTGTGCACCATCCAATTGATTATGCTCGAGTTGTCAAGAAGATTGGAAATGAAATGGATTTGACTCTTGTAGATTTAGAAGGGCTTTTACCCTCTGCTGTCATTATGGTTGTCTCTGTTACAGCATCTACCACAAGTGGAAAGCCACTTCCAGAGGAAATTCTCCAGAAAACAATTGATGCATGTGATCGAGCTCTTGCTTTAGATTCAGCAAAGAAAATGGTCCTTAATTTTGTTGAAAGTAGAATGGGAGATATTGCACCAAATCTTTCAGCAATAGTTGGAAGTGCTGTTGCAGCAAAACTAATGGGAACTGCTGGTGGTCTTGCTGCTTTAGCTAAGATGCCTGCTTGCAATGTTCAGCTTCTTGGTGCAAAGAAAAAAAATCTTGCTGGGTTTTCCACAGCGACCTCACAATTTCGAGTAGGTTATATTGAGCAAACGGAGATATTCCAATCAACACCTCCTCCTTTGAAGATGCGTGCTTGTCGACTCGTAGCTGCAAAGTCAACACTTGCAGCACGAGTTGACTCCACGATGGGGGATCCTACTGGGAAGACTGGTAGAGTCTTCAAAGACGAGATCCTTAAGAAAATTGAAAAGTGGCAAGAGCCTCCACCTGCAAAACAACCAAAACCTCTTCCGGTCCCTGATTCTGAACCCAAAAAGAAGAGAGGTGGCCGTCGATTAAGGAAGATGAAGGAAAGATATGCAACGACAGAGATGAGGAAGCTAGCTAACAGGATGCAGTTTGGGGTGCCTGAAGAGAGTTCTTTAGGAGATGGATTGGGGGAAGGGTATGGAATGCTTGGTCAGGCTGGGAGTGGCAAGTTGCGTGTGTCGGCTGCTCAGAGCAAGCTTGCTGCAAAAGTTGTTAAGAAGTTCAAGGAAAAACGCTATGGAAGCAGTGGTGCTACATCTGGGCTGACCTCAAGTTTGGCATTTACTCCTGTACAAGGAATTGAACTGTCGAATCCTCAGGCCCATTTGAACCAGCTAGGCAGTGGAACTCAAACCGGAAAATCCTTCCTTTTTGACGGCTCCAATGAAACTCTTCTGTGGAGGTTTGCTTCTCCGTCCATTTATCGACCAGCATCTTTGTCTTTGATGTCAAAAACTCCGAACCAAAATGGCATTGCCAACCCCACACCAAATAAGCCAGCGCCTTTATTTCCCCATATACGGAAAGGGAAAGGGCAAGGGAAAGGGAAAAGATTTTCTTTGTTCAATTTCAAACAGAAGAAAAATGCAAAAAATAATAGAGCAGCACAAAGACAAACATCTTCCTTCTCTTTCCATCGCATGTCTTACTTTGGAGGTTCACAAATGATTCTTCTATGCCAGACTACAATACCCATTTTCTTCCTAACTTGGAATAACATGAGCTTCCTCCTTGCCCAATCCATTGCATCTATTTGCTGCTGTGATAGCTTGATAAATTCTGGACCCTCCACAGTATCTGGGCTCGAGACATTGGTTTTGGAACCTGAAGGAACAGTGGCTGTTGGTGTTGATATACTTCCATTGATCTCCATTTCTTCAAAAGAAGCTACATATGCTCTATGTCGATCTCGTCATGAGAATGGGGATAAACATCTGCATTTGACAACTGAACACAGCCCTCGTCTTGTTAGCAATTCACCAAACTGGTAA 2046 42.33 MYATLADSFLADLDELSDEDKFQGEEDADAENMEEDIDGDLADLESLNYDDLDSVSKLQKTQRYNDIMQKVEDALQTDSNISNQGIVLEDDPEYQLIVECNALSVDIENEIIIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAVIMVVSVTASTTSGKPLPEEILQKTIDACDRALALDSAKKMVLNFVESRMGDIAPNLSAIVGSAVAAKLMGTAGGLAALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPPLKMRACRLVAAKSTLAARVDSTMGDPTGKTGRVFKDEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYATTEMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAKVVKKFKEKRYGSSGATSGLTSSLAFTPVQGIELSNPQAHLNQLGSGTQTGKSFLFDGSNETLLWRFASPSIYRPASLSLMSKTPNQNGIANPTPNKPAPLFPHIRKGKGQGKGKRFSLFNFKQKKNAKNNRAAQRQTSSFSFHRMSYFGGSQMILLCQTTIPIFFLTWNNMSFLLAQSIASICCCDSLINSGPSTVSGLETLVLEPEGTVAVGVDILPLISISSKEATYALCRSRHENGDKHLHLTTEHSPRLVSNSPNW 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4961347 4968150 + Lsi04G005360.1 Lsi04g00536 660585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00536 681 PANTHER PRE-MRNA SPLICING FACTOR PRP31 3 469 IPR027105 GO:0000244|GO:0000398|GO:0046540
Lsi04g00536 681 ProSiteProfiles Nop domain profile. 217 335 IPR002687 -
Lsi04g00536 681 Gene3D - 78 217 - -
Lsi04g00536 681 MobiDBLite consensus disorder prediction 331 362 - -
Lsi04g00536 681 SUPERFAMILY Nop domain 89 335 IPR036070 -
Lsi04g00536 681 Gene3D Nop domain 218 343 IPR042239 -
Lsi04g00536 681 Pfam snoRNA binding domain, fibrillarin 104 332 IPR002687 -
Lsi04g00536 681 MobiDBLite consensus disorder prediction 16 35 - -
Lsi04g00536 681 Pfam Prp31 C terminal domain 340 457 IPR019175 -
Lsi04g00536 681 PANTHER U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31 3 469 - -
Lsi04g00536 681 SMART NOSIC_2 96 148 IPR012976 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00536 K12844 PRPF31; U4/U6 small nuclear ribonucleoprotein PRP31 - csv:101210892 822.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00536 Lsi-Chr4:4961347 Lsi06g01631 Lsi-Chr6:26603737 3.03E-18 dispersed
Lsi04g00536 Lsi-Chr4:4961347 Lsi11g00478 Lsi-Chr11:5048834 2.09E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g739 . . . . . . Bma14g01786 . . . . Cma18g00806 . Car18g00738 . Cpe09g00498 Cpe01g01522 . . . . . . . Cla05g02530 Cam05g2720 Cec05g2751 Cco05g2792 Clacu05g2722 Cmu05g2576 Cre05g2690 . . . . Lsi04g00536 Csa05g02346 Chy10g00914 Cme10g00513 . Blo11g00906 Bda07g01595 . . . . . . . . Cma04g01721 . Car04g01752 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006442 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00536 Lsi_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0