Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00545 ATGAGTAATAGTGCCTTTGGTGAAGAGCTATCGATTTTGGGACACTGTGATAATCGGAGACAAAGATATAATGGTAGGTTATCACCAAAAGTAAAACAGAAAGGTCAAACATCATCCAGACAGCAGCCATTCAAATGTGTCAATAATCTTTCTACTGATGTACTTAAAAAAGTTTCTTCAGTTGCCGCCCAAAATAGTAAAAGTCCCGATCGTTTTGATTTTCATGTCGGTGAACGGCAGCCTGACTGTTTTGGGAAATCAAATCAGAGGCAGTTACTTGTGTTTCTTAACCCACAGTCCTTTTATCTCGCAACAATGCCTCCATCCCTCATATACAGCATTGTAGACATCTCTTCACGATTCCATCTCTGTTTCCCAAAAAACTCTGGAGTTATCTCCTCACAGCTTTTGGATGGTCAGTACTTCTCCCAATGGTGTTTTGTCATGGTTGGTTACGATTCTGATGGAGCATTCATTGCATTAGCCCTTCCACAGCTCACGAAGGATGCTTCTGAAGTTCAGATTTCAGATACCTCGATGCCTCAAAAGCATTTGTTTCATGGCGTTTGTGCTGCCCTTATGTTGGATAGTTATGGGCAGACCATTGTAGTTGTTGACGAGGAGGAAGCTTTGGCAATGGAAATACCCGAGCATGATGATAAATGGGACGATCCAAAATCCGTCGAAATTTGTTTCAAGGACATTAAGTGTCTTGATCCAGAGGGATGGGATGCACCTTTTCAGTATATAATGCTGTCACCACGCAAAGGCTTAGAAACTCTTATCCTGTTTTCTCGATCATCTCAAAGGTCTATTGATAGGACTGTGATGTTATATACAGTGGATCAGTGGAGATTGCAAGGAAGATCTATGTTTCGGTATTTACAACAGCGAGCATTTTCAACAAATAAGGTGACACGCAATTATCACTTTTTCAATACCTATTTTTATGAAAAGCTAAAGGAGGCTGTGTCAAACAAGGTGACTGACTATACACTGTTTTCGAGGGGGAAGGACAGAGATAATTTTTTTGTCAAGTTCAGAAGGTGGTGGAAAGGCGTTAATATATTTCAGAAAGCATATGTACTGATTCCAATCCATGAGGATCTCCACTGGAGTTTGGTGATTATATGTTTTCCACAGAAAGAAGATGAATCGGGGCCCATTATACTTCATTTGGATTCACTGAGACTACACTCTAGCAGATCAATTTTTGATAACATTAAGAGTTTTATAAAAGAGGAATGGTGCTACTTGGATCGAGAAGTTGTTGATTCAAATCTCCCAATGCCACATAGAATATGGAAAAATATCTCTCGAAGAATTGAAGAGAAAATAATCGAGGTTCCGCAGCAAAAGAACGACTATGACTGTGGTCTCTTTGTTCTATACTTCATAGAGCGCTTCATTGAAGAGGCTCCCGATAGGCTAAAAAGGAAGGACCTGGATATGTTTGGCAAGCGGTGGTTCAAACCCCAGGAAGCTTCCAGCTTGAGGACGAGGATAAGATGTCTGCTCAAACTAGAGTTCCAAGATGTGAAAAGACGATGTCTGTCAGGTTCTGTGGAGAACTCTTCCTCAGATCACGCTCCAAACCAATGA 1602 40.82 MSNSAFGEELSILGHCDNRRQRYNGRLSPKVKQKGQTSSRQQPFKCVNNLSTDVLKKVSSVAAQNSKSPDRFDFHVGERQPDCFGKSNQRQLLVFLNPQSFYLATMPPSLIYSIVDISSRFHLCFPKNSGVISSQLLDGQYFSQWCFVMVGYDSDGAFIALALPQLTKDASEVQISDTSMPQKHLFHGVCAALMLDSYGQTIVVVDEEEALAMEIPEHDDKWDDPKSVEICFKDIKCLDPEGWDAPFQYIMLSPRKGLETLILFSRSSQRSIDRTVMLYTVDQWRLQGRSMFRYLQQRAFSTNKVTRNYHFFNTYFYEKLKEAVSNKVTDYTLFSRGKDRDNFFVKFRRWWKGVNIFQKAYVLIPIHEDLHWSLVIICFPQKEDESGPIILHLDSLRLHSSRSIFDNIKSFIKEEWCYLDREVVDSNLPMPHRIWKNISRRIEEKIIEVPQQKNDYDCGLFVLYFIERFIEEAPDRLKRKDLDMFGKRWFKPQEASSLRTRIRCLLKLEFQDVKRRCLSGSVENSSSDHAPNQ 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5004405 5017841 + Lsi04G005450.1 Lsi04g00545 660594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00545 533 PANTHER UBIQUITIN-LIKE PROTEASE 4-RELATED 293 525 - -
Lsi04g00545 533 PANTHER UBIQUITIN-LIKE PROTEASE 4 3 241 - -
Lsi04g00545 533 SUPERFAMILY Cysteine proteinases 221 506 IPR038765 -
Lsi04g00545 533 PANTHER UBIQUITIN-LIKE PROTEASE 4 293 525 - -
Lsi04g00545 533 Gene3D - 293 506 - -
Lsi04g00545 533 Gene3D - 309 446 - -
Lsi04g00545 533 PANTHER UBIQUITIN-LIKE PROTEASE 4-RELATED 3 241 - -
Lsi04g00545 533 Pfam Ulp1 protease family, C-terminal catalytic domain 291 494 IPR003653 GO:0006508|GO:0008234
Lsi04g00545 533 ProSiteProfiles Ubiquitin-like protease family profile. 228 469 IPR003653 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00545 K16287 ULP1C_D; ubiquitin-like-specific protease 1C/D [EC:3.4.22.68] - csv:101214614 479.174
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00474 Lsi-Chr2:3937759 Lsi04g00545 Lsi-Chr4:5004405 2.08E-13 dispersed
Lsi03g00703 Lsi-Chr3:9239637 Lsi04g00545 Lsi-Chr4:5004405 1.49E-13 dispersed
Lsi04g00545 Lsi-Chr4:5004405 Lsi08g01025 Lsi-Chr8:18813324 2.79E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g728 . . . . . . Bma14g01789 . . . . Cma18g00801 . . Sed04g0635 Cpe09g00501 Cpe01g01527 Bhi07g01721 Tan04g1227 Cmetu10g0164 Lac13g0205 Hepe10g1645 . . Cla05g02536 Cam05g2727 Cec05g2757 Cco05g2798 Clacu05g2728 Cmu05g2581 Cre05g2695 . . . . Lsi04g00545 Csa05g02341 Chy10g00908 Cme10g00518 . Blo11g00911 . . . . . . . . . Cma04g01728 . Car04g01760 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005400 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 3 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00545 Lsi_Chr04 FPKM 0.0 0.0 0.102899 0.064911 2.495674 2.531515 2.93026 0.026566 0.067541 0.071159