Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00547 ATGGAAGCGATTCTTGCATCCACACCTTCGCAACTCAAATCTCCTTACCAGTCTCTCTCTTCCAAATTGTGGCCTTCTTTTTCCCTAACTCTCCGGGAAAGTAAACGGAAGACGATCAGATACCCTCCGGCAACAGCGAGTTCACCGGCTTCTCGCATTCGTCTCAGAGTGTTCGCCAATTCGCAATCGGCGCCTGCTTCCGCCGTGGCGTCGGAAGTGTCGTCGGTGCCGTCGGAAATGAAGGCGTGGGTGTATGGTGAGTATGGAGGCGTCGATGTGTTGAAATTTGATAGCAGTGTATTGGTGCCTGAAGTGAAGGAGGATCAGGTTCTGATTAAGGTCGTTGCGGCGGCGCTTAACCCTGTCGATGCTAAACGGATGCAGGGGAAGTTCAAGGCTACGGATTCTCCTCTTCCAACAGTTCCAGGGTATGATGTAGCAGGTGTGGTGGTGAAGGTGGGAAGTCAGGTAAAGGAGCTTAAAGAAGGGGACGAAGTATATGGCAACATCAACGAGAAGGCCCTCGATGGCCCCAAACAGTTTGGTTCTCTTGCAGAGTACACGGCCGTGGAAGAGAAATTATTAGCCTTAAAACCCAAGAATATTGATTTTGTTCAGGCCGCTGGATTGCCTTTGGCCATTGAAACTGCCTACGAAGCCACTTCGAGCACTGGAAAGTTAGAGTTTTTGAAAAGTTTGGGTGTGGATTTAGCCATTGACTATACCAAGGAGAATATCGAAGATTTGCCCGAAAAATTTGATGTAGTCTACGATGCAATTGGGCAGTGTGATAAGGCAGTGAAGGTAGTGAAAGAAGGTGGTAGTGTCGTAGCGCTAACCGGTGCGGTAACGCCGCCTGGTTTCAGATTTGTGGTCACTTCAGATGGAGCTGTTCTAAAGAAACTGAACCCCTATCTAGAAAGCGGGAAGGTGAAGCCGATCGTCGACCCGAAAGGACCGTTTCCATTCTCTCAGGTAACAGAGGCCTTCTCATACGTTGAAAGCAGCCGAGCCACTGGAAAAGTAGTCATACATCCAATCCCATAA 1047 49.19 MEAILASTPSQLKSPYQSLSSKLWPSFSLTLRESKRKTIRYPPATASSPASRIRLRVFANSQSAPASAVASEVSSVPSEMKAWVYGEYGGVDVLKFDSSVLVPEVKEDQVLIKVVAAALNPVDAKRMQGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKALDGPKQFGSLAEYTAVEEKLLALKPKNIDFVQAAGLPLAIETAYEATSSTGKLEFLKSLGVDLAIDYTKENIEDLPEKFDVVYDAIGQCDKAVKVVKEGGSVVALTGAVTPPGFRFVVTSDGAVLKKLNPYLESGKVKPIVDPKGPFPFSQVTEAFSYVESSRATGKVVIHPIP 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5024874 5029573 + Lsi04G005470.1 Lsi04g00547 660596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00547 348 Gene3D - 296 344 - -
Lsi04g00547 348 Gene3D - 87 220 - -
Lsi04g00547 348 Gene3D - 221 295 - -
Lsi04g00547 348 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 220 348 - -
Lsi04g00547 348 SUPERFAMILY GroES-like 77 226 IPR011032 -
Lsi04g00547 348 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 220 348 IPR044626 GO:0016628
Lsi04g00547 348 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 40 219 IPR044626 GO:0016628
Lsi04g00547 348 CDD MDR_like_2 80 344 - -
Lsi04g00547 348 Pfam Zinc-binding dehydrogenase 233 344 - -
Lsi04g00547 348 Pfam Alcohol dehydrogenase GroES-like domain 108 170 IPR013154 -
Lsi04g00547 348 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 40 219 - -
Lsi04g00547 348 SMART PKS_ER_names_mod 89 344 IPR020843 GO:0016491
Lsi04g00547 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 315 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00547 K18980 EO, FaQR; 2-methylene-furan-3-one reductase [EC:1.3.1.105] - csv:101215501 545.428
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02115 Lsi-Chr2:27333184 Lsi04g00547 Lsi-Chr4:5024874 7.06E-23 dispersed
Lsi02g02116 Lsi-Chr2:27337336 Lsi04g00547 Lsi-Chr4:5024874 6.30E-17 dispersed
Lsi04g00547 Lsi-Chr4:5024874 Lsi03g00924 Lsi-Chr3:17545826 5.22E-48 dispersed
Lsi02g01411 Lsi-Chr2:19479853 Lsi04g00547 Lsi-Chr4:5024874 1.33E-06 transposed
Lsi09g00477 Lsi-Chr9:5020592 Lsi04g00547 Lsi-Chr4:5024874 9.73E-07 transposed
Lsi02g01560 Lsi-Chr2:21449989 Lsi04g00547 Lsi-Chr4:5024874 1.83E-111 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g707 . . . . . . Bma14g01793 . . . . . . . Sed01g1019 . Cpe01g01529 Bhi07g01725 Tan04g1230 Cmetu09g1229 Lac13g0203 Hepe10g1643 . . Cla05g02539 Cam05g2729 Cec05g2760 Cco05g2800 Clacu05g2730 Cmu05g2583 Cre05g2697 Cone13ag1038 . . . Lsi04g00547 Csa05g02339 Chy10g00906 Cme10g00520 . Blo11g00915 Bda07g01601 . . . . . . Cmo04g02843 . Cma04g01730 . Car04g01763 . . . . . . . . . . . . . . . . . . . Chy09g00330 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011084 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00547 Lsi_Chr04 FPKM 1.830275 2.521471 0.825356 1.510775 4.599558 6.130622 4.375767 0.0 0.263611 0.270933