Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00550 ATGTCTTCTTCAAACAATACTTCTTCTCCTTCATCGGATTCTGTTTCAGATTCAGATTCAAGTTTGCCGCCTGAAGCTTCGGGTTCTTCTTCTCCTCCTCCTCCTCCCCCTTCTCCTCCACCGTCACTGCTGCCAGATGATTTTTCATCGGTGCTACTGGATCAAGCCGATGGTCCTTTGCCGTCGACTTTTTCATCAGCAATTAAAGCTCCACCTATCGACGACCAAGTTTCACCATCTTCCTCACCTCCAGCTCCTCCAAATCCTGGAACTACACCGCCGGCCCCTACTGGCGGCTCTAATTCTAATGGATCCGACGAGAATCCATCGCCACCGCCTGAAGATTCCGCTTCGCCACCGCCTCATCCACCACCGTCTTCACCACCGCCTCCACAACTGCCGTCTATGGTTGGCGTTGTTAATCCTCCACCCTCCCCTGTTCCGGCCACAAAAGCATCTCCGGCACCTCCAAGAAGTCCACCTTCTCCAATATTTGAGAATGAACCCACTATTCCAGTGGATGACAGCGCCGTTCAGGCTCCTAGTACAGCCAAGGAGCCTCCACCTTCTGAAACAACGGATCCTCTTCCTCCATCAGAAAATCCAGTCGTGATTCCTTCACCAGGTGCAAACCCGGCGACTGGGAAACGAACTCCGAGTCCACCTCAAGGAATAACTACTCCCACTTCAGAGTCTAACATTCTTTCACCTCCCACAGTCACATCCACACGCACTCCGAACAACTCACCTCATTCCGCCGACTCAACGCCAGTAAAATCACCATTAGGGCAGTTCAAGGCACCATCGTCTGGTTCAAGTAATCACACCGATGTTGCAGTAGGCGCTGCAGTCGCTGGAGTTCTCGTACTCGTTTTGGTTGCTGTGGTTTTTATGTTCACAAGGAAGAAGAAAAGACGGGGAGAGATGTATACCGGCCCCTACATGCCTCCTAATAATTTTGGTGTGAAATCAGATGGAAATTACTATCCACATCAACATGGGGGGAACTCTGGTTCTACTGAAGGCTTCTACACTCAAGTCCCACATACTCCCATTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGATACAGTGGCAGTGGAATGGAGTCAGGTGTGATAAACAGTGCCAAGTTCTTCTTTAGCTATGAAGAATTGATGGAGATTACGTCTGGATTTTCGCATCAAAACATTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCGGGGTTGGCTTCCAGAAGGGAAGCCAGTGGCTGTGAAGCAACTCAAGGCAGGAAGTGGACAGGGGGAGAGGGAGTTCAAGGCGGAAGTTGAGATTATCAGTCGTGTTCATCATCGACATTTGGTGTCTTTAGTGGGCTATTGCGTCTCTGAGCATCATAGATTGCTCATCTATGAGTTTGTTCCTAATAAGACTCTTGAGCATCATCTCCTTAGCGGTAATGGAGTGCCCGTGTTGGATTGGTCCAAAAGACTCAAAATCGCTCTAGGAGCTGCAAAGGGTTTGGCATATCTTCATGAAGATTGCCATCCCAGAATTATCCACCGAGACATCAAGTCAGCCAACATTTTGCTGGATGATGCTTTTGAGGCGCAGGTTGCAGATTTTGGACTTGCAAAACTGACTAACGATACACACACCCACGTTTCCACTCGTGTCATGGGGACATTTGGATACATGGCACCCGAGTATGCATCAAGTGGGAAATTGACAGACAGATCAGATGTATTCTCGTTTGGGGTTGTGCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCCACTCAGCCCCTGGGGGATGAGAGTTTGGTTGAATGGGCTCGTCCACACCTCCTGCACGCCCTTGAAACTGGGGAGTTTGAAGGATTGATAGATCCACGCCTTGGAAAACAGTATGTGGAAAGTGAAATGTTCAGAATGATCGAAGCAGCAGCTGCCTGCGTTCGTCATTCGGCTCCCAAAAGGCCTCGCATGGTTCAGGTGGTAAGAGCACTAGACATTGAAAGTGATATGTCTGACCTCTCCAATGGTGTCAAATATGGCCAGAGCACCATCTATGATTCTGGACAATACAATCAAGACATTTCTAAATTCAGAAGAATGGCACTCGGTTCAGACAGCTCTGGATACGACATTTACAGTAGTGAATTCAATACCAGAGAAATGAGTGCAAGTCGTGAATCATGGAGATTCCAAAATAACTCAAGTGGTGAATCAGAAACTCAAGCTTTTAAAGGACGAACTGGGGCACCAAGTCACCATAGCGGTCGACAATTCTAA 2286 48.21 MSSSNNTSSPSSDSVSDSDSSLPPEASGSSSPPPPPPSPPPSLLPDDFSSVLLDQADGPLPSTFSSAIKAPPIDDQVSPSSSPPAPPNPGTTPPAPTGGSNSNGSDENPSPPPEDSASPPPHPPPSSPPPPQLPSMVGVVNPPPSPVPATKASPAPPRSPPSPIFENEPTIPVDDSAVQAPSTAKEPPPSETTDPLPPSENPVVIPSPGANPATGKRTPSPPQGITTPTSESNILSPPTVTSTRTPNNSPHSADSTPVKSPLGQFKAPSSGSSNHTDVAVGAAVAGVLVLVLVAVVFMFTRKKKRRGEMYTGPYMPPNNFGVKSDGNYYPHQHGGNSGSTEGFYTQVPHTPIGNSFGSQKGTGYSGSGMESGVINSAKFFFSYEELMEITSGFSHQNILGEGGFGCVYRGWLPEGKPVAVKQLKAGSGQGEREFKAEVEIISRVHHRHLVSLVGYCVSEHHRLLIYEFVPNKTLEHHLLSGNGVPVLDWSKRLKIALGAAKGLAYLHEDCHPRIIHRDIKSANILLDDAFEAQVADFGLAKLTNDTHTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPHLLHALETGEFEGLIDPRLGKQYVESEMFRMIEAAAACVRHSAPKRPRMVQVVRALDIESDMSDLSNGVKYGQSTIYDSGQYNQDISKFRRMALGSDSSGYDIYSSEFNTREMSASRESWRFQNNSSGESETQAFKGRTGAPSHHSGRQF 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5048319 5051647 + Lsi04G005500.1 Lsi04g00550 660599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00550 761 Pfam Protein tyrosine and serine/threonine kinase 396 665 IPR001245 GO:0004672|GO:0006468
Lsi04g00550 761 ProSiteProfiles Protein kinase domain profile. 393 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00550 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Lsi04g00550 761 CDD STKc_IRAK 399 668 - -
Lsi04g00550 761 MobiDBLite consensus disorder prediction 77 94 - -
Lsi04g00550 761 Gene3D Transferase(Phosphotransferase) domain 1 469 684 - -
Lsi04g00550 761 ProSitePatterns Protein kinases ATP-binding region signature. 399 421 IPR017441 GO:0005524
Lsi04g00550 761 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 111 735 - -
Lsi04g00550 761 MobiDBLite consensus disorder prediction 213 274 - -
Lsi04g00550 761 MobiDBLite consensus disorder prediction 112 167 - -
Lsi04g00550 761 SMART serkin_6 393 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00550 761 MobiDBLite consensus disorder prediction 1 274 - -
Lsi04g00550 761 MobiDBLite consensus disorder prediction 95 111 - -
Lsi04g00550 761 MobiDBLite consensus disorder prediction 1 26 - -
Lsi04g00550 761 MobiDBLite consensus disorder prediction 730 761 - -
Lsi04g00550 761 MobiDBLite consensus disorder prediction 27 44 - -
Lsi04g00550 761 SUPERFAMILY Protein kinase-like (PK-like) 373 667 IPR011009 -
Lsi04g00550 761 MobiDBLite consensus disorder prediction 188 205 - -
Lsi04g00550 761 Gene3D Phosphorylase Kinase; domain 1 362 468 - -
Lsi04g00550 761 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 111 735 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00221 Lsi-Chr3:2790686 Lsi04g00550 Lsi-Chr4:5048319 6.85E-174 dispersed
Lsi04g00550 Lsi-Chr4:5048319 Lsi03g01118 Lsi-Chr3:21364216 8.06E-95 dispersed
Lsi06g00871 Lsi-Chr6:18218127 Lsi04g00550 Lsi-Chr4:5048319 7.24E-165 dispersed
Lsi04g00550 Lsi-Chr4:5048319 Lsi11g00260 Lsi-Chr11:2621815 1.05E-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83561 PF07714 PK_Tyr_Ser-Thr 8.70E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00550 - - csv:101215732 1075.08