Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00551 ATGGTTTTCTGTTTCTCTTCTCACTGTTCATTGAGTCAGTTGAGAAGAAGAAATCGAAAGCCAGAGACAATGAGAAGCTTTCAGGGAGCTCTGGAGTGTCTCAGGGCTTTAGTAGAGACCAAACTTTGGGATTATTGCATTGTTTGGAAATCAAGGGATGATTCTTCTTCCAGCGGTGGAGTTTCCAACCACGGCGGGAAAGAGGAAGCCGGAGAGACGATCCCAGCTACTCTTTGTAAGGACACTCGATTTCGACATTTTAGAAGGACAAATGCTTGCCAAGCACTTGCTCAGTTCCCTTCTTCAGTATCATTAAACTCTGGGGTCCATGGGGATGTTTTGATTTCGAATCAACCCATGTGGCTTACAAGTGCTGAAGTTTCTTCTACTTCAACCTTTTCACATGAGTTGACCGGAACTCGAGTGCTAATTCCAGTTTCTGGTGGAATTGTGGAGCTTTTTGCTACAAAACATATGCCAAGAGAGGGAGAGGTTATAGACTTTGTAATGGCTCACTGTAATGTCTCTCTGGAGCAAGAATTTGATACAGAGAGTGAACTGAATGCTGGCCTCAATGAGAAAAGACTTCATTCATCTACCAAATTCTATCCAGTAGACTGGCCTGAAACTCAGCCCTTGCTTGATTTCAAATCCAAATTAGAAATTCTTCCTTCAGTATCCCAGTCCAGCTCATTTCCCAGCTGTGGTGAAGGATCATCCAGTGGCTCAAAGCCTTCCAATGAGCATCAATACTTTGATTCCTATTCGAGTTTGGTTTCATGTAGACTCTTCAACCAACCAATTCACAGGTCTTTTGAATCGAAAAGGCCAATGCACCAAGAAGATTTGCTGGAACAGCAAAGGGATGTGGCTTCAGAATATTCAAAGAGCTTGCAGAAAGATGAAGCCAAAACTGGAGGGAAACAAGGAAAGGAAGTTTTCAAATCCAAGAATCTCATGACAGAGAGAAGGAGAAGAAACAAGATTCGGGATCGTCTCTACGCTCTACGTGCTTTAGTGCCTAATATATCCAAGATGGATAGAGCATCAATAATTGTGGATGCTATCAACTACATAAGAGAGTTGGAAGAGAATGTGAAAAGCCTTCAGAATGAACTCATTCAATTGGAGCACAAGGATCAAAAGAACAAAAACTTGAAGATTTCTCCATTAGAGAAGAAAAATGATGACACTAATTGTTGGCCTCTGATTCAGGAAGATCAACCAATGTTTATCCTTGGTGAGGAGAAGCCTATGGAGGTGGAAGTGGAAGTGATGCAAATTAATGAAAGAGATTTCTTAATCAAACTATTCTGCAAGAGGAAACAAGGCGGCGTAGTGAGCTCGATCAAGGCTATGGATTCGTTGGGCTTGCAGGTTGTTGATGTCAATATTACAACCTTTGGGGGTATGGTCCTGAACATTTTCCATGTTGAGGCAAATGAAAACGATATTCAGCCGAAGAGATTGAGAGACTCACTGATCAAGCTAACAAGCAGAGAAATTAGACAATTAAAATAG 1521 41.68 MVFCFSSHCSLSQLRRRNRKPETMRSFQGALECLRALVETKLWDYCIVWKSRDDSSSSGGVSNHGGKEEAGETIPATLCKDTRFRHFRRTNACQALAQFPSSVSLNSGVHGDVLISNQPMWLTSAEVSSTSTFSHELTGTRVLIPVSGGIVELFATKHMPREGEVIDFVMAHCNVSLEQEFDTESELNAGLNEKRLHSSTKFYPVDWPETQPLLDFKSKLEILPSVSQSSSFPSCGEGSSSGSKPSNEHQYFDSYSSLVSCRLFNQPIHRSFESKRPMHQEDLLEQQRDVASEYSKSLQKDEAKTGGKQGKEVFKSKNLMTERRRRNKIRDRLYALRALVPNISKMDRASIIVDAINYIRELEENVKSLQNELIQLEHKDQKNKNLKISPLEKKNDDTNCWPLIQEDQPMFILGEEKPMEVEVEVMQINERDFLIKLFCKRKQGGVVSSIKAMDSLGLQVVDVNITTFGGMVLNIFHVEANENDIQPKRLRDSLIKLTSREIRQLK 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5051242 5054880 - Lsi04G005520.1 Lsi04g00551 660600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00551 506 Coils Coil 352 379 - -
Lsi04g00551 506 MobiDBLite consensus disorder prediction 227 248 - -
Lsi04g00551 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Lsi04g00551 506 Pfam Helix-loop-helix DNA-binding domain 318 363 IPR011598 GO:0046983
Lsi04g00551 506 CDD ACT_UUR-ACR-like 434 496 - -
Lsi04g00551 506 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 33 169 IPR025610 -
Lsi04g00551 506 Gene3D - 307 380 IPR036638 GO:0046983
Lsi04g00551 506 MobiDBLite consensus disorder prediction 287 310 - -
Lsi04g00551 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 378 IPR036638 GO:0046983
Lsi04g00551 506 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 73 499 - -
Lsi04g00551 506 PANTHER TRANSCRIPTION FACTOR BHLH90 73 499 - -
Lsi04g00551 506 SMART finulus 319 368 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00551 - - - csv:101215974 725.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00551 Lsi-Chr4:5051242 Lsi11g01209 Lsi-Chr11:20620419 8.28E-66 dispersed
Lsi04g00551 Lsi-Chr4:5051242 Lsi06g01209 Lsi-Chr6:22450517 2.34E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g698 . . . . . . . . . . . . . . Sed04g0627 . Cpe01g01533 Bhi07g01732 Tan04g1237 Cmetu10g1279 . . . . Cla05g02543 Cam05g2733 Cec05g2764 Cco05g2804 Clacu05g2734 Cmu05g2587 Cre05g2701 . . . . Lsi04g00551 . Chy10g00903 . . . Bda07g01603 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007013 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25145 PF14215 bHLH-MYC_N 6.70E-12 CL0161 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00551 Lsi_Chr04 FPKM 10.693548 7.974544 3.198892 3.026902 3.619133 0.0 2.831133 0.892826 0.491819 0.0