Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00554 ATGGATCTCGGAATCACCGGAACCGGAGGGAATTCGGACGCCCAATCTGACAGTCAAATATCTCATTTGTCATTGGATATTGGGGGCACTCTTGCTAAGTTGGTGTATTTTTCTGGAAACAAGAAATTGTTGAAAAATGATCAAGTTCAGAGTTCTGTAAAAGCAAGTGGAAGAAGCCGTTCCATTCTCCAAGGGAAGCTTCACTTTGCCAAGTTTGAAACAAGCAAAATTGATGAGTGTGTAGAGTTTATTAAACGCATGCAATTCGGTTCCCACCACCCCAAGGATCTTGGCAATGACAGAATAGTTGTAAAGGCCACTGGTGGTGGAGCATTTAAATTTGCTGATCTCTTCAAAGAAAAGCTTGACTTTTGTTTAGACAAGGAAGACGAAATGGATTGCCTCGTCGCCGGAGCAAATTTTCTCCTAAAGGCAGTTGACCAAGAAGCATTTACGTACATAGGCGGTCATCATGAATTTGTGAAGATTAACCAAGATGATCTGTACCCTTTCCTCCTTGTCAACATTGGCTCTGGAGTCAGCATGATTAAGGTGGATGGAAATGGGAAGTTTGAGCGGGTAAGTGGAACAAGCCTTGGTGGCGGGACATTCTGGGGTTTGGGTAAGCTTTTGACAAAGTGCAACAGTTTTGACGAGTTGTTGGAGTTGAGTCACCAAGGGAATAATAGAGTGGTAGACATGCTTGTTGGAGATATATATGGTGGAATAGATTATTCTAAGTTACAAGCCTTCACACTATTCTGCCCTCTTACGATTCAGGTGGGTCTTTCATCCACAGCCATTGCTTCTAGCTTTGGCAAGACAATTTCAGCAAACAAAGTGCTTGAAAACTACAGGGCTGAGGATCTTGCTCGGTCCCTTCTAAGAATGATTTCAAATAACATTGGACAGCTTGCCTATCTTACTGCGCTTCGATTCGGACTCAAGCGGATATTTTTTGGAGGATTCTTCATACGTGGTCATGCTTATACTATGGACACCATTTCTGTTGCCGTTCATTACTGGTCGAAGGGCGATGCGCAAGCAATGTTCTTGCGGCACGAAGGATTTCTTGGGGCCTTGGGTGCTTTTGTGAACTACAACAAACAGGGCCCTGATAACTTCATATTAATGCAACAAGTCCCAAAACACAAGCCGGAGTCTGATGGTACAGCACCGGAAGGGGAAGACAGTGAGTATGCACGTATAGATTGTAGTGTCTATATAGATTAA 1233 43.47 MDLGITGTGGNSDAQSDSQISHLSLDIGGTLAKLVYFSGNKKLLKNDQVQSSVKASGRSRSILQGKLHFAKFETSKIDECVEFIKRMQFGSHHPKDLGNDRIVVKATGGGAFKFADLFKEKLDFCLDKEDEMDCLVAGANFLLKAVDQEAFTYIGGHHEFVKINQDDLYPFLLVNIGSGVSMIKVDGNGKFERVSGTSLGGGTFWGLGKLLTKCNSFDELLELSHQGNNRVVDMLVGDIYGGIDYSKLQAFTLFCPLTIQVGLSSTAIASSFGKTISANKVLENYRAEDLARSLLRMISNNIGQLAYLTALRFGLKRIFFGGFFIRGHAYTMDTISVAVHYWSKGDAQAMFLRHEGFLGALGAFVNYNKQGPDNFILMQQVPKHKPESDGTAPEGEDSEYARIDCSVYID 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5060153 5063875 - Lsi04G005540.1 Lsi04g00554 660603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00554 410 SUPERFAMILY Actin-like ATPase domain 121 367 IPR043129 -
Lsi04g00554 410 Gene3D - 228 281 - -
Lsi04g00554 410 Gene3D - 150 356 - -
Lsi04g00554 410 Gene3D - 24 149 - -
Lsi04g00554 410 SUPERFAMILY Actin-like ATPase domain 20 147 IPR043129 -
Lsi04g00554 410 PANTHER PANTOTHENATE KINASE 8 409 - -
Lsi04g00554 410 Pfam Fumble 22 365 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lsi04g00554 410 PANTHER PANTOTHENATE KINASE 8 409 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lsi04g00554 410 TIGRFAM panK_eukar: pantothenate kinase 22 365 IPR004567 GO:0004594|GO:0005524|GO:0015937
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00554 K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase [EC:2.7.1.33] - csv:101216215 701.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00371 Lsi-Chr2:3196590 Lsi04g00554 Lsi-Chr4:5060153 8.79E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g684 . . . . . . . . . Cmo18g00800 . Cma18g00796 . Car18g00727 Sed06g1641 Cpe09g00506 . Bhi07g01734 Tan04g1242 Cmetu10g1660 Lac13g0197 Hepe10g1637 . . Cla05g02545 Cam05g2735 Cec05g2766 Cco05g2806 Clacu05g2736 Cmu05g2589 Cre05g2703 . . . . Lsi04g00554 Csa05g02334 Chy10g00902 Cme10g00526 Blo06g00878 . Bda07g01607 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008331 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00554 Lsi_Chr04 FPKM 0.0 0.260334 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0