Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00556 ATGGGGCTTACGTTCACAAAGCTTTTCAGTCGGCTTTTTGCCAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGCGGCTGAATTGGAGTTAGTACATGGATTTAATGTTGAGACTGTAGAGTACAAAAACATCAGCTTCACAGTCTGGGATGTTGGGGGTCAAGACAAGATTCGTCCCTTGTGGAGGCACTACTTCCAGAACACACAGGGTCTCATTTTTGTTGTTGATAGCAACGACAGAGATCGAGTTGTTGAGGCCAGGGATGAATTGCATAGGATGTTGAATGAGGTATTCCATATTAATGATGAGCTACGAGATGCCGTTCTGCTTGTGTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATCACCGACAAGCTCGGTACATCCAGAGCACTTGCGCCACCTCCGGAGAGGGGCTTTATGAGGGGTTGGATTGGCTCTCCAACAACATTGCTAACAAGGCATAAGGATATCGAACAGTTGCTTCTGAGACTCGCAGTTCTGGATGCAGGGTGA 537 46.0 MGLTFTKLFSRLFAKKEMRILMVGLDAAELELVHGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEVFHINDELRDAVLLVFANKQDLPNAMNAAEITDKLGTSRALAPPPERGFMRGWIGSPTTLLTRHKDIEQLLLRLAVLDAG 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5081799 5083859 - Lsi04G005560.1 Lsi04g00556 660605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00556 178 PANTHER ADP-RIBOSYLATION FACTOR 1 135 - -
Lsi04g00556 178 TIGRFAM small_GTP: small GTP-binding protein domain 37 129 IPR005225 GO:0005525
Lsi04g00556 178 ProSiteProfiles small GTPase Arf family profile. 1 175 - -
Lsi04g00556 178 Gene3D - 4 162 IPR027417 -
Lsi04g00556 178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 144 IPR027417 -
Lsi04g00556 178 SMART arf_sub_2 1 178 - -
Lsi04g00556 178 Pfam ADP-ribosylation factor family 34 136 IPR006689 GO:0003924|GO:0005525
Lsi04g00556 178 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 135 IPR024156 GO:0005525
Lsi04g00556 178 SMART sar_sub_1 1 169 IPR006689 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00556 K07937 ARF1_2; ADP-ribosylation factor 1/2 - csv:101217176 261.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00556 Lsi-Chr4:5081799 Lsi11g00737 Lsi-Chr11:8053657 2.05E-43 dispersed
Lsi02g01770 Lsi-Chr2:23478738 Lsi04g00556 Lsi-Chr4:5081799 3.42E-35 transposed
Lsi02g02613 Lsi-Chr2:32540863 Lsi04g00556 Lsi-Chr4:5081799 9.31E-19 transposed
Lsi02g01575 Lsi-Chr2:21629783 Lsi04g00556 Lsi-Chr4:5081799 4.42E-62 wgd
Lsi03g01374 Lsi-Chr3:24691718 Lsi04g00556 Lsi-Chr4:5081799 7.30E-64 wgd
Lsi04g00556 Lsi-Chr4:5081799 Lsi08g01676 Lsi-Chr8:24519267 4.41E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g680 . Blo16g01160 . Bda11g01269 Bpe13g01466 . . . . Cmo18g00798 . Cma18g00794 . . Sed06g1643 . . Bhi07g01737 Tan04g1244 Cmetu03g0260 . . . . Cla05g02547 . . Cco05g2808 . . Cre05g2705 . . . . Lsi04g00556 Csa05g02332 Chy10g00900 . . . . Bda11g01269 . . . Bma06g00618 . Cmo04g02828 . Cma04g01736 . . . . . . . . . . . . . . . . . . . . . Chy09g00345 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017856 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2 0 0 0 0 0 1 1 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00556 Lsi_Chr04 FPKM 3.302653 3.960294 20.305155 22.071655 63.622272 52.589874 59.395142 10.467917 10.380738 12.636712