Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00562 ATGATGGGAAGCTCTGCCTTATCCATCTTCTCCAACGAGAGGAGAGTGAAAGGAAGGGAAGGTACTGTAACAATGGCAAGAATCCCATCATTGCCAGGCCTCAACCTATTCTCTTCACTTCCTTCAGCTCCACCGCCTCACGATCCCTCACCCACTTCTTCTCCTTCAACACCCATTCCAATTCCCAAATACCCTCCTCCCAAATCCCGCACTCTTCGAACCAACAACCCTCCAAAACCCCCTAATCCTGCTCTCAAAACCTTCCACCGCCGTTCCAACTACTACAAGCCCGTCAAAGATGGCGTTATCTCATCCCACGGCGATCGCGCCGTCGTCATCGGCGATTCCGGTGTCTCCTATCTACTCCCCGATGCTCCATTCGAGTTCCAATACAGTTACTCTGAGACCCCCAAAGTCAAGCCCATTGCAATTCGCGAACCGGCGTTTCTACCCTTTGCACCTCCCACGATGCCGAGGCCATGGACCGGCAAAGCTCCATTGAAAAGCTCGAAGAAGAAAATCCCTCTCTTCGATTCCTTCAATCCGCCCCCTCCTGGTACTAACGGAGTTAAGCAAGTCCAAATGCCTGGCCCGTTCCCGCTTGGCCAGTTTCCCAAGGAGGGGAAAAGCAGGGAGGAGATACTTGGGGAACCTCTCAAGAATTGGGAGATTCGCATGCTGGTGAAACCCCATTTTTCACATAATCGCCAGGTTAATCTTGGAAGGGATGGACTTACGCATAATATGTTGGAACTGATACATTCACATTGGAAACGGCAGCGTGTCTGTAAAGTTCGTTGCAAAGGCGTTCCCACAGTAGATATGGATAATATCTGCCATCATATCGAGATAGGTGCTTTACTAGTTTTACAACTACCTATCACACTTTTCCTTTCTGGGTATGGCCATATGGGACTATCTGTTTATGGATTGAATTATAATTCTCCAGCAAGAGAAATATGGCATAACTCACTCATAACAAATGCTCAATGTGCCGAACTCCAAACATTAAGGTACAAGGAAAAAACAGGTGGAAAAATAATTCACCGAGTCGGTGGTGTTTTATATCTGTTCCGAGGTAGAAACTACAATTATCGTACTCGCCCTCAATACCCTGTAATGCTCTGGAAACCTGCAGCCCCTGTGTATCCAAAACTTATTCAAGAAGCTCCGGAAGGATTAACAAAAGAGGAAGCTACTAAACTAAGGATGAAAGGGAAAAATCTTTTGCCAATATGTAAATTAGCAAAAAATGGTGTGTACATTTCCTTGGTGGATGACGTAAGGCATGCTTTTGAAGGAAGCATTTTGGTGAAGATTGATTGCACTGGCATGCATGAAATTAATCCTGAGCTAAACCTCCATATAGCCTGCAGTATCAATGAAACTGAGTTGGTTATGCACTATAGGAAGCTTCATTTAACATATGACGACACTGGGCACCTTTCTGCTGAGTTGAGCATTTTCATTCTCTTTTCTGCCTGTATACACATGCTTGAATTGGTTCCTTGTGTGTTATTATCATTTGACAACGAACAGATATTAATGTGGAGGGGAAAGGATTGGAAGTCAGTTATTTCAGACGATCGTTCTGCTCCTCTTCCTACTCGAGTTAGCTCAAATGATTGTTTGGGTTCATCTGGCGAGTCTATTGATAATGGTGACCTAGAACAAGGCAATCATCATACGATCAAAACTAGCCCAAAAATGAAGCTGCTATGGGAGCATGCCATCGATTCAAACAAGGCATTGTTGCTAAATGAGATTGGTCTTGCTCCTGATGACCTTTTAGAGAAAGTTGAGGAGTTTGAGAGAATTTCACAAGCAACTGAGCATTCTTACCCAGCACTTATCATGTCAAGTGAAGATGTCAACAGCCCAGATGACAGCCCTGAAAGTCAGGATCACAGCGAAGCTAACTACAACTCCGATGACGTAGGTCAGGAAGGAGACCTTTTTGATAATGTTGACCCATTAGTCCCTTTAGGATCATTACCTGTTGATATTATAGCAAAGAAGCTCAGCCCTGAATAG 2034 44.69 MMGSSALSIFSNERRVKGREGTVTMARIPSLPGLNLFSSLPSAPPPHDPSPTSSPSTPIPIPKYPPPKSRTLRTNNPPKPPNPALKTFHRRSNYYKPVKDGVISSHGDRAVVIGDSGVSYLLPDAPFEFQYSYSETPKVKPIAIREPAFLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPPPPGTNGVKQVQMPGPFPLGQFPKEGKSREEILGEPLKNWEIRMLVKPHFSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEIGALLVLQLPITLFLSGYGHMGLSVYGLNYNSPAREIWHNSLITNAQCAELQTLRYKEKTGGKIIHRVGGVLYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEATKLRMKGKNLLPICKLAKNGVYISLVDDVRHAFEGSILVKIDCTGMHEINPELNLHIACSINETELVMHYRKLHLTYDDTGHLSAELSIFILFSACIHMLELVPCVLLSFDNEQILMWRGKDWKSVISDDRSAPLPTRVSSNDCLGSSGESIDNGDLEQGNHHTIKTSPKMKLLWEHAIDSNKALLLNEIGLAPDDLLEKVEEFERISQATEHSYPALIMSSEDVNSPDDSPESQDHSEANYNSDDVGQEGDLFDNVDPLVPLGSLPVDIIAKKLSPE 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5120204 5128035 + Lsi04G005620.1 Lsi04g00562 660611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00562 677 MobiDBLite consensus disorder prediction 42 84 - -
Lsi04g00562 677 SUPERFAMILY YhbY-like 218 289 IPR035920 -
Lsi04g00562 677 MobiDBLite consensus disorder prediction 537 562 - -
Lsi04g00562 677 ProSiteProfiles CRM domain profile. 392 529 IPR001890 GO:0003723
Lsi04g00562 677 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 340 447 IPR044599 GO:0000373
Lsi04g00562 677 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 499 675 IPR044599 GO:0000373
Lsi04g00562 677 MobiDBLite consensus disorder prediction 35 87 - -
Lsi04g00562 677 Pfam CRS1 / YhbY (CRM) domain 220 359 IPR001890 GO:0003723
Lsi04g00562 677 Pfam CRS1 / YhbY (CRM) domain 394 452 IPR001890 GO:0003723
Lsi04g00562 677 Gene3D - 218 298 IPR035920 -
Lsi04g00562 677 Gene3D - 394 465 IPR035920 -
Lsi04g00562 677 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 25 283 - -
Lsi04g00562 677 SMART CRS1_YhbY_2 394 518 IPR001890 GO:0003723
Lsi04g00562 677 SMART CRS1_YhbY_2 219 359 IPR001890 GO:0003723
Lsi04g00562 677 ProSiteProfiles CRM domain profile. 217 320 IPR001890 GO:0003723
Lsi04g00562 677 MobiDBLite consensus disorder prediction 537 554 - -
Lsi04g00562 677 MobiDBLite consensus disorder prediction 614 662 - -
Lsi04g00562 677 SUPERFAMILY YhbY-like 393 476 IPR035920 -
Lsi04g00562 677 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 340 447 - -
Lsi04g00562 677 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 499 675 - -
Lsi04g00562 677 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 25 283 IPR044599 GO:0000373
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00562 - - - cmo:103488994 909.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00562 Lsi-Chr4:5120204 Lsi11g00242 Lsi-Chr11:2459861 7.15E-113 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g667 . . . . . Bpe10g00846 . Bma15g00177 . . . . . . Sed06g1652 . Cpe01g01543 Bhi07g01749 Tan04g1255 Cmetu10g0674 Lac13g0187 Hepe10g1626 . . Cla05g02555 Cam05g2743 Cec05g2775 Cco05g2815 Clacu05g2744 Cmu05g2596 Cre05g2711 . . . . Lsi04g00562 Csa05g02323 Chy10g00891 Cme10g00538 Blo06g00885 . . . . . . . . . . Cma04g01743 . Car04g01776 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00562 Lsi_Chr04 FPKM 7.703184 7.716033 26.414762 26.088272 5.915548 5.35684 4.948285 20.202259 19.078094 17.62529