Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00564 ATGTCTACGGAAGAGACGGCGAATGAGCAAGGCGGCGGCGCCGCCCACGGCGACATTTTGGAGTCCATTCTCTCCCACGTCCCTCTCATCGATCTGGCTTCCTCCTCCTGCGTTTCACGTGGCTGGGAACGCGCCGTTTTATCCTCTCTCTCCCATTCCAACGCCCTCAAACCATGGCTCCTCCTCCACTCTCCTTCCGCCGCCGCTTACGACCCCCGTTCCGCCGTATGGATGGACATCAACTACCGCCCTCCGATCACACCCGCCGCCCCCCTCCGTTCTTCTCACTCCACTTTACTTTACACACTTACCCCCTCCAAATTCTCTTTCTCAATCGACCCCCTCCACCTGACGTGGCAGCACGTGGATCCCCCGCTGACGTGGCGGACCGATCCAATCGTTGCCCTTGTTGCCAACAGAGCCGTCGTCGTCGCCGGCACGTGCGACTTAGTCGACGAACATCCGGCCGTTGAAATTTACGACTTGGAGTCAAAAACGTGGAGCACGTGCGATGAACTGCCATCAGTCTTCGCCGAATATGCGACCGCCACATGGTTTTCAGTTGCTGTTGACGACGATCAATTACATGTCATGCATAAAAATTCGGGGACGATATTTTCCTTCGACCCGATAAATATATCGTGGTCCGGGCCGTACGAAGTAAAACCCGAACCGGACGTGTTTTCTTCTATTATTGGATTTGCCGGCGGCGGAATGGTGGTTGTGGGACTAAAGGGATCGCCGGAGGATGTTAAAAGCGTGAAGATATATAACGTGGTAGTTCAATTTTCTGAATGGCAGGAAATTGGGGAAATGCCTAAGTCGTTGGTTGAGAAATTGCAGGGAGAGAGTGCAGAAATGGCGTCGATAGGATTGTCGTCGGCGGGAGATTTCATATTCCTCCACCATGGTTCCGACCCAGTGGAGGTGATACAGTGCGAGGTGGTCGACAGCGGTTGTAGGTGGGGAATCGTACCAAATACGGTGGTGGATGACCGGACCCGGCTCCGGCGGTTGGTGTTCACCAGTTCCAATGTGGGCATCCGAGATTTGAAGAAAGCATTAAGATTGGAAAGCCCACGAATCACCATCAAGATTAAGGATTCTGACGGGGACTGA 1119 53.89 MSTEETANEQGGGAAHGDILESILSHVPLIDLASSSCVSRGWERAVLSSLSHSNALKPWLLLHSPSAAAYDPRSAVWMDINYRPPITPAAPLRSSHSTLLYTLTPSKFSFSIDPLHLTWQHVDPPLTWRTDPIVALVANRAVVVAGTCDLVDEHPAVEIYDLESKTWSTCDELPSVFAEYATATWFSVAVDDDQLHVMHKNSGTIFSFDPINISWSGPYEVKPEPDVFSSIIGFAGGGMVVVGLKGSPEDVKSVKIYNVVVQFSEWQEIGEMPKSLVEKLQGESAEMASIGLSSAGDFIFLHHGSDPVEVIQCEVVDSGCRWGIVPNTVVDDRTRLRRLVFTSSNVGIRDLKKALRLESPRITIKIKDSDGD 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5147348 5148466 + Lsi04G005640.1 Lsi04g00564 660613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00564 372 PANTHER KELCH REPEAT-CONTAINING F-BOX-LIKE PROTEIN 5 355 - -
Lsi04g00564 372 SUPERFAMILY F-box domain 18 48 IPR036047 GO:0005515
Lsi04g00564 372 Pfam F-box domain 18 49 IPR001810 GO:0005515
Lsi04g00564 372 SUPERFAMILY Kelch motif 65 305 IPR015915 GO:0005515
Lsi04g00564 372 Gene3D - 63 321 IPR015915 GO:0005515
Lsi04g00564 372 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 5 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00564 - - - cmax:111490395 602.823
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02071 Lsi-Chr2:26894440 Lsi04g00564 Lsi-Chr4:5147348 5.56E-20 dispersed
Lsi04g00564 Lsi-Chr4:5147348 Lsi08g01666 Lsi-Chr8:24424214 1.86E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g662 . . Bda01g02215 Bda11g01276 Bpe13g00501 . . . . . . . . . . . Cpe01g01545 Bhi07g01751 Tan04g1262 Cmetu10g0967 Lac13g0184 Hepe10g0029 . . Cla05g02557 Cam05g2745 Cec05g2777 Cco05g2817 Clacu05g2746 Cmu05g2598 Cre05g2713 Cone13ag1053 Cone19ag1042 . . Lsi04g00564 Csa05g02321 Chy10g00889 Cme10g00540 Blo06g00887 . . Bda11g01276 . . Bma01g00043 . . . . Cma04g01745 Cma05g00026 Car04g01778 Car05g00022 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003162 2 2 1 1 2 2 2 2 2 1 1 2 2 1 1 2 2 3 2 2 1 1 2 2 2 2 2 1 1 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00564 Lsi_Chr04 FPKM 1.868243 2.108563 2.587796 3.048405 105.802444 104.5625 101.786491 0.500254 0.108563 0.164891