Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00565 ATGGAAGAAATGTACGGTTTGCAATCCACGGGGGAGTATTCAGATAAGGCCCTGATGTCGCCGGAGAATCTGATTCTTCCACCGGATTATCAGAGCCTTCTTGTGAGTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCGGCGGCGGCATCGGCGATTTCGGAAGCTGAAGCAGCATCGATCACGCCAGAAATTCAACGTGAAGAAGATATGGTGAACGTGATCAAAGCAAAAATTTCTTCTCATCCTACTTATCCTCGTTTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGGGCGCCTCCGGAGATTGCACATTTGTTAGAGGGAATCCGTCAAGAAAGCGACCTTTGTAACCGTCACGCTGTCACCACGTGCTTGGGCGTCGATCCTGAGCTCGATGAATTCATGGAAACGTACTGCGATATGTTGGTGAAGTACAAATCAGATCTCAAAAGGCCTTTCGACGAAGCAACTACGTTCTTGAATAAGATCGAACTGCAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGTTTTCGCTGCGAAGGTGCTTTTGGTGCCCTCTCTTACCCACGCACTTAGTCACTCCCAGCTGGTTAGTGGTTGTCACTTCTATCGACAAGTACTCTGCCGTCTTCTTCGTGCGGATGATGTGTACGACACGTGTCACTACCTCATTGGATATCTGGGGTTTGCAGTGGTCACCTTCACTGATACCCGTTTCTTTATCTTTTCCCTTTTGGGGCCCTCCTTTCTCTTTCTTACACTAAGATTGAAGTTGGTGCCTATCACCGACTTTTTTACTTGGTCTGAACAGAATCAGCTTACTAGCCAAGAGATGAGAAAGGAAAATGACGGTGCTGTCTCATCGGATGAAGAATTGAGCGGTGGAGAGATGGAAGTTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAATAGGGATCTTAAGGACAAGCTTCTACGTAGATTTGGGAGTCATATTAGTACTTTAAAATTGGAGTTCTCAAAAAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACACTCCTTGAATGGTGGAACGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAGGTTGCATTGGCCGAGAGAACAGGCCTAGATCAAAAGCAAATTAACAATTGGTTCATAAATCAGAGGAAACGCCACTGGAAGCCATCAGAGAATATGCAGTTTGAAGGAATGGATGGGCTTTCTTCTGGTAGATTCTTCAGGGAGGACTGA 1293 46.4 MEEMYGLQSTGEYSDKALMSPENLILPPDYQSLLVSSGEFRDRIPVFGSNELLSAAASAISEAEAASITPEIQREEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPEIAHLLEGIRQESDLCNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSVFAAKVLLVPSLTHALSHSQLVSGCHFYRQVLCRLLRADDVYDTCHYLIGYLGFAVVTFTDTRFFIFSLLGPSFLFLTLRLKLVPITDFFTWSEQNQLTSQEMRKENDGAVSSDEELSGGEMEVVEAEAQTKGENRDLKDKLLRRFGSHISTLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSENMQFEGMDGLSSGRFFRED 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5168784 5176102 + Lsi04G005650.1 Lsi04g00565 660614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00565 430 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Lsi04g00565 430 Gene3D - 345 419 - -
Lsi04g00565 430 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Lsi04g00565 430 SMART HOX_1 348 413 IPR001356 GO:0003677
Lsi04g00565 430 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 294 419 - -
Lsi04g00565 430 ProSitePatterns 'Homeobox' domain signature. 384 407 IPR017970 GO:0000981|GO:0006355
Lsi04g00565 430 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Lsi04g00565 430 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 294 419 - -
Lsi04g00565 430 MobiDBLite consensus disorder prediction 290 310 - -
Lsi04g00565 430 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677|GO:0005634
Lsi04g00565 430 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 186 - -
Lsi04g00565 430 SUPERFAMILY Homeodomain-like 347 422 IPR009057 -
Lsi04g00565 430 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Lsi04g00565 430 ProSiteProfiles ELK domain profile. 326 346 IPR005539 GO:0003677
Lsi04g00565 430 Pfam ELK domain 326 347 IPR005539 GO:0003677
Lsi04g00565 430 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Lsi04g00565 430 CDD homeodomain 358 410 IPR001356 GO:0003677
Lsi04g00565 430 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 186 - -
Lsi04g00565 430 SMART ELK_2 326 347 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00565 Lsi-Chr4:5168784 Lsi11g01422 Lsi-Chr11:22788484 8.57E-24 dispersed
Lsi08g01663 Lsi-Chr8:24399936 Lsi04g00565 Lsi-Chr4:5168784 1.77E-70 transposed
Lsi04g00565 Lsi-Chr4:5168784 Lsi06g01561 Lsi-Chr6:26015326 5.06E-24 wgd
Lsi04g00565 Lsi-Chr4:5168784 Lsi08g01662 Lsi-Chr8:24387597 1.53E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25147 PF03791 KNOX2 1.80E-24 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00565 - - csv:101211876 359.377