Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00566 ATGAAACCCTACAACTTCTCCTTTTCGATTCCATTCCTTCTAATACTATTGTTGTTTCATCTTCTAATCCAATCGGCGGCTGATCCCAGAGCTACTGAGGCGGCTCTCATATGTTCCAACAACACTGCTTCGCCGCCGGAGCGATCGACCTTCGTAGCGAATTTCTTGGACTCCATGGATGCGGTTACTCCTCTTATTGCTTCACAGCGATTTGCAGCCGTGTTGAATGGGACTGGAAATACGTCTGTTTATGCTTTTGGAGAGTGTATGAACGATCTTACTCAATCGGACTGTGATCTCTGTTTCGCGCAGATGAAAACTCAGATCCTGCGGTGTCTCCCCTTTCAGCTTGCTACTCGAGGGGGCAGACTTTTCTATGACGGGTGTTATCTTAGGTATGATTATTATAATTTCTTTAACGAATCTTTGAGTGGTGTGGATAGGACTGTATGTGGGAAATCGGATTACAGTGGGAATCGGACTATTTTTAGTGATAATGCTATGAAATTGGCGAGGAATTTGAGTGTAGTAGCGCCTAAGAACAATGGGTTTGCTGTGGGTTTGGTGAATTTGAGAAATGTGTCCGTTTATGGATTGGGTCAGTGTTGGAAATTTGTGAAAGGGGATTCTTGCTCCAAGTGTTTGGTTGATGCAGCTAAGGAAATTGATTCTTGTCCTCCAAAAACTGAAGGAAGGGTGTTGAATACTGGCTGTTACTTCAGATATTCAACTGAACGATTTTATTTCAACAGCACGGCAACCGCTACTGGAGGAAATGGAAGTCGCCGTCTGGCGATAATTTTGGCTTCAGTATCTGCTGCTGTGGCTGTTGCATTGATTATTTCAACGGTTGTTTTCTGTGCCAGAAGGAGAGTTGTGAGGAAACGCAAAGAGAAAAAGCAACTCGGTCCTCTTGTGGCTATTGTTAATAAGTCCAAGCTTAATTTTTCATACGAGACTCTTGAAAGGGCCACAAATTACTTTGACCAATCCAATAAACTGGGACAAGGAGGTTCTGGTTCAGTTTATAAAGGAACTCTATCAGATGGCAGAGTTGTAGCAATCAAGAGGCTTTTCTTCAATACACGACAATGGGTGGACCATTTCTTTAATGAAGTAAATCTCATCAGTGGCATTCAACACAAAAATCTTGTAGGGCTGCTGGGATGCAGTATTACAGGCCCGGAAAGTCTCCTTGTTTATGAATACGTGCCAAATCAAAGCTTGCACGATTACCTGTTTGGTAACAAGAACGTCCAGCCGCTGAGTTGGGAATCCAGGTTTAAGATTGTCTTAGGCACAGCTGAAGGCTTGGCTTATCTTCATGAGGAGTCCAACGTGAAAATCATTCATCGGGACATAAAACTAAGCAACATTCTGCTGGACAATGATTTCACTCCAAAGATTGCTGATTTTGGACTTGCTAGACTGCTTCCTGAAGATAAGACACACATTAGTACTGCAATTGCTGGCACACTAGGTTACATGGCTCCAGAATATGTAGTGCGTGGCAAGTTGTCTGAAAAGGCCGACGTTTACAGTTTTGGAGTTTTTGCCATTGAAGTCATCACTGGAAGGAGGAATAATCACTTCTTTCAAGATTCAACGTCCATCTTACAAAAGGTATGGAATTTGTATGGAGAGGGAAGGCTATATGCAGCTGTTGATCCGATCCTTGCTGGCGATTATCCACGAGATGAAGCATCTCAGTTGCTTCAAATAGGTCTAGTTTGTGTGCAAGCCTTTGCTGACCTAAGGCCATCCATGTCGATGGTTGTGAAAATGCTTACAGCAAATTATGAGATTCCCCAGCCAAAACAGCCTCCATATCTTCATCCTACAAGTGGAAACATGAAATCCCAAAATTCTTCAGACTCATCCAATCCCGTTTTGTATTATAACTCGCGATCTTCGCAAAATAGCATGACCCAAAGCATCATCGACCCTAGATGA 1953 43.01 MKPYNFSFSIPFLLILLLFHLLIQSAADPRATEAALICSNNTASPPERSTFVANFLDSMDAVTPLIASQRFAAVLNGTGNTSVYAFGECMNDLTQSDCDLCFAQMKTQILRCLPFQLATRGGRLFYDGCYLRYDYYNFFNESLSGVDRTVCGKSDYSGNRTIFSDNAMKLARNLSVVAPKNNGFAVGLVNLRNVSVYGLGQCWKFVKGDSCSKCLVDAAKEIDSCPPKTEGRVLNTGCYFRYSTERFYFNSTATATGGNGSRRLAIILASVSAAVAVALIISTVVFCARRRVVRKRKEKKQLGPLVAIVNKSKLNFSYETLERATNYFDQSNKLGQGGSGSVYKGTLSDGRVVAIKRLFFNTRQWVDHFFNEVNLISGIQHKNLVGLLGCSITGPESLLVYEYVPNQSLHDYLFGNKNVQPLSWESRFKIVLGTAEGLAYLHEESNVKIIHRDIKLSNILLDNDFTPKIADFGLARLLPEDKTHISTAIAGTLGYMAPEYVVRGKLSEKADVYSFGVFAIEVITGRRNNHFFQDSTSILQKVWNLYGEGRLYAAVDPILAGDYPRDEASQLLQIGLVCVQAFADLRPSMSMVVKMLTANYEIPQPKQPPYLHPTSGNMKSQNSSDSSNPVLYYNSRSSQNSMTQSIIDPR 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5175720 5180225 - Lsi04G005660.1 Lsi04g00566 660615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00566 650 Pfam Salt stress response/antifungal 38 134 IPR002902 -
Lsi04g00566 650 Pfam Salt stress response/antifungal 154 244 IPR002902 -
Lsi04g00566 650 MobiDBLite consensus disorder prediction 605 650 - -
Lsi04g00566 650 Pfam Protein kinase domain 329 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00566 650 ProSiteProfiles Protein kinase domain profile. 328 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00566 650 ProSiteProfiles Gnk2-homologous domain profile. 144 247 IPR002902 -
Lsi04g00566 650 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 620 - -
Lsi04g00566 650 Gene3D Transferase(Phosphotransferase) domain 1 404 607 - -
Lsi04g00566 650 CDD STKc_IRAK 334 597 - -
Lsi04g00566 650 Gene3D Phosphorylase Kinase; domain 1 288 403 - -
Lsi04g00566 650 ProSiteProfiles Gnk2-homologous domain profile. 33 138 IPR002902 -
Lsi04g00566 650 MobiDBLite consensus disorder prediction 611 650 - -
Lsi04g00566 650 Gene3D - 32 138 IPR038408 -
Lsi04g00566 650 Gene3D - 146 247 IPR038408 -
Lsi04g00566 650 SMART serkin_6 328 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi04g00566 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 21 620 - -
Lsi04g00566 650 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Lsi04g00566 650 SUPERFAMILY Protein kinase-like (PK-like) 314 633 IPR011009 -
Lsi04g00566 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00566 Lsi-Chr4:5175720 Lsi01g00387 Lsi-Chr1:3364300 1.50E-106 dispersed
Lsi06g00728 Lsi-Chr6:12373736 Lsi04g00566 Lsi-Chr4:5175720 5.05E-52 transposed
Lsi06g01232 Lsi-Chr6:22704046 Lsi04g00566 Lsi-Chr4:5175720 1.66E-90 transposed
Lsi03g01367 Lsi-Chr3:24601731 Lsi04g00566 Lsi-Chr4:5175720 0 wgd
Lsi04g00566 Lsi-Chr4:5175720 Lsi08g01657 Lsi-Chr8:24371565 2.77E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83562 PF00069 Pkinase 1.80E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00566 - - csv:101218749 1169.07