Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00568 ATGGAGGTAGACGGCGGAGCCACGGCGGCGGCGGCGGGTCAGCCGAGGAAATTCTCTCTTCCGGTGGACTCCGAACACAAATCCACCAAATTCAACATATTCTCCGTCGCAGCACCGCACATGCGAACATTTCACCTCTCCTGGATTTCCTTCTGCGCTTGTTTCATTTCCAGTTTCGCGGCGGCTCCTCTGCTTCCGGTGATACGCGACAACCTCAATTTAACCGATACCGACATTGGAAACGCCGGAATCGCCTCCGTCTCCGGCGCTGTCTTCGCCCGAATCATGATGGGTTCCGCCTGCGACTTGGTCGGACCACGTCTCGCCTCCGCTTCACTCATCCTCATAACTTCACCGGCGGTTTACTTAACCTCCATAGCTTCATCCCCTGTTTCGTTTCTCCTCGTTCGATTCTTCACCGGATTCTCCCTCGCTACATTCGTCTCAACCCAATTCTGGATGAGCTCCATGTTCTCCTCCAACGTCGTCGGCACCGCCAACGGCGTAGCCGGCGGCTGGGGGAACCTAGGCGGCGGTGCAACACAGTTAATCATGCCGTATGTTTTCGCCATCATAGAACACATCGGCGCAACGAAATTCACCGCGTGGAGAATCGCTTTCTTCATTCCAGCACTATTCCAAACGCTTTCCGCCTTCGCCGTTCTCCTCCTCGGCGAGGACACTCCAGATGGAAACTTCCGGCGGCTGCAAAAAACAGGGGAGAAGGCGAAAGACAAATTGTCAAAAGTGGTGTATAATGGGGTGAGGAATTACAGGGGATGGATTCTAGCATTGACTTATGGGTATAGTTTCGGAGTGGAATTGACGATTGATAATGTAATAGCGAATTACTTCTACGATAGGTTTAATCTGAATCTGCACACGGCGGGGATAGTGGCGGCGAGTTTTGGGCTGGCGAATCTGTTTTCGAGGCCGTACGGCGGAGTATTGTCGGATGTGGTGGGAAAGAGATATGGGATGAGAGGGAGGCTGTGGGCTTTGTGGTTGGTGCAAACAATTGGAGGAATTTTGTGTGTGATTCTTGGGTTGGTTAATTCATTAAGTGCTTCCATTGCGATTATGATCGTTTTTTCAGTGTTTGTTCAAGCTGCTTGTGGACTTACTTTTGGTGTTGTTCCTTTCGTCTCTCGAAGTATGTTGTTTGGGCCTTCCTCAAAAATTGCTTCTGAAGAAGACTATTACTTGTCTGAATGGAGCTCTGAGGAGAAGGCCAAAGGCTTCCATATGGCTAGCCTTAAGTTTGCTGAGAATAGTCGAACTGAAAGAGGCAAAAGCCTCAAGGGAACTGCTGATGCTGCTGATGATGTCTCCCCTAATGTTTAA 1344 50.45 MEVDGGATAAAAGQPRKFSLPVDSEHKSTKFNIFSVAAPHMRTFHLSWISFCACFISSFAAAPLLPVIRDNLNLTDTDIGNAGIASVSGAVFARIMMGSACDLVGPRLASASLILITSPAVYLTSIASSPVSFLLVRFFTGFSLATFVSTQFWMSSMFSSNVVGTANGVAGGWGNLGGGATQLIMPYVFAIIEHIGATKFTAWRIAFFIPALFQTLSAFAVLLLGEDTPDGNFRRLQKTGEKAKDKLSKVVYNGVRNYRGWILALTYGYSFGVELTIDNVIANYFYDRFNLNLHTAGIVAASFGLANLFSRPYGGVLSDVVGKRYGMRGRLWALWLVQTIGGILCVILGLVNSLSASIAIMIVFSVFVQAACGLTFGVVPFVSRSMLFGPSSKIASEEDYYLSEWSSEEKAKGFHMASLKFAENSRTERGKSLKGTADAADDVSPNV 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5193072 5197984 - Lsi04G005680.1 Lsi04g00568 660617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00568 447 ProSiteProfiles Major facilitator superfamily (MFS) profile. 43 447 IPR020846 GO:0022857
Lsi04g00568 447 PANTHER HIGH AFFINITY NITRATE TRANSPORTER-RELATED 386 433 - -
Lsi04g00568 447 Gene3D MFS general substrate transporter like domains 37 233 IPR036259 -
Lsi04g00568 447 CDD MFS_NRT2_like 44 385 IPR044772 GO:0015112
Lsi04g00568 447 Gene3D MFS general substrate transporter like domains 242 396 IPR036259 -
Lsi04g00568 447 PANTHER HIGH AFFINITY NITRATE TRANSPORTER-RELATED 1 386 - -
Lsi04g00568 447 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 386 433 IPR044772 GO:0015112
Lsi04g00568 447 Pfam Major Facilitator Superfamily 48 372 IPR011701 GO:0022857|GO:0055085
Lsi04g00568 447 SUPERFAMILY MFS general substrate transporter 38 382 IPR036259 -
Lsi04g00568 447 MobiDBLite consensus disorder prediction 425 447 - -
Lsi04g00568 447 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 386 IPR044772 GO:0015112
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00136 Lsi-Chr3:1910105 Lsi04g00568 Lsi-Chr4:5193072 2.04E-119 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00568 K02575 - csv:101212365 707.597