Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00572 ATGAGTAATTCCATTAGTCAGAATATACTCCACCAGAGATTGCTTCGTCCTTCAGTTTTTGATAACCAAAGTAAATTCAATCCTTCCGGGACCCATAAGAATACTTTGTTTCAAGCTGCATTAGCCAATCAAGTTCCAGCACAGCATTGGAAATCTCCTATATCAACAAAGTTCTTAGGGAACGGTCTAAACGTTAAAAAACCAGGGATGGCCACTGGAACAGGTCGCCGCAGCTTTCCTGTTAACCCAAATGCTGTATTAGCCACGGATCCTGCTTCCAAGCTTGCTGGGAAGTTCAAACTGGATGAGAATATTGAACTGCAGGTCGATGTTAGTGTCCCAACTTCAGGTTCCATTAGACGTGTAAATATCCTGGTCACAAACATTGCTGGCTCTCTTCTTCTTCATTGGGGTGCAATACATGATAGAAAAGATAAATGGGCGCTTCCATCATGTTGCCCAGATGGAACTCAAGTATATAAGAACAGAGCTCTTAGAACTCCTTTTCTGAAATCTGGTTCCGATTCTACCCTAACAATTGAGGTTGATGACCCTGCAATAGAAGCAATAGAGTTTCTTTTACTTGATGAAGCTCATAATAAATGGTATAAGAACAATGACAAAAATTTTCATGTTACGTTACCTGTGAAAGAAAAGCTCATTTCAGATGTTTCAGTTCCTGAAGAACTTGTACAAATTCAAGCATATTTGAGATGGGAAAGAAAGGGAAAACAGATGTATACTCCACAACAGGAGCAGGAGGAGTATGAAGCAGCTCGAGCTGAGTTATTGCAGGAATTAACCAGGGGTGCTTCCGTACAAGATCTCAGAGCTAGACTGACCAAAGAAAATGATGGCAGTGAAACAATGGAGCTATCCACTCCCAAAGACAAGACAATTCCTGATGAACTTGTTCAAATTCAAGCTTTTATACGTTGGGAGAAAGCAGGGAAACCCAATTACTCTGCCAAGCAGCAACTTAGGGAATTTGAAGAAGCAAAGGAAGAGTTGCTATCAGAACTAACTAAAGGTGCTACTATTGATGAGATTCGGAAGAAGATTACCAAAGGAGAAATTAAAACTGAAGTAGCAAAGCAGTTGCAGGATAAAAAGTACTTTAGAATAGAGAAAATTCAGCGCAAGAAGAGGGACTTGGTACAACTTGTAAATAGATATGCTTCTCAACCTATAGAGGAAACATATACAGCCAAACCAAAAGCCTTGACAGAGGTTGAGAAATTTGCAAAGATAAAGGAGGAACAGGATGGTGGTGAAGTTATAAACAAAATCATCTACAAGCTTGGTGATAAGGATCTTCTGGTTCTTGTAACAAAAAATGCTAGCAAGACGAAGGTTTATCTGGCTACAGATTTACAGGAGCCTGTTACTCTTCACTGGGGTTTGTCTAAAACAAATGCTGGCGAGTGGCTGACACCCCCGCCTGATGTACTTCCACGAGGTTCAGTTTCATTGAGCCAGGCAGCTGAAACACAATTTATATTCAACGCTGATGGTTCCTCTCTAAAGGTCCAATATTTAGAAATCTTAATCGAAGAGGACGGTTTTCTGGGAATGCCATTTGTTCTTCAGTCTTTTGGAAATTGGATCAAGAACAAAGGCTCGTCAGATTTTTATGTTGCCTTTGCTATCCAACCAAAGAAAGTGCGAAAGGATACTGAGGGTGGCAAAGGTACTGCAAAGTCACTGTTGGATAACATTGCAGATCTGGAGAGTGAGGCAGAAAAGTCCTTCATGCATCGATTTAACATTGCAGCTGACTTGATGGATCAAGCTAAAGATGCTGGTGAATTGGGACTTGCAGGGATCTTGGTGTGGATGAGATTTATGGCAACAAGGCAGCTTATATGGAATAAAAATTATAATGTGAAACCACGTGAAATCAGTAAAGCACAAGACAGACTCACAGATTTGTTAGAGAGTATTTATGCAAGCCAGCCACAATATAGGGAGCTTTTACGGATGATTATGTCTACTGTTGGACGGGGGGGTGAAGGAGATGTTGGGCAGAGAATTCGGGATGAAATTTTAGTCATTCAGAGAAACAATGATTGCAAAGGAGGAATGATGGAAGAATGGCATCAGAAATTGCACAATAATACTAGCCCTGATGATGTAGTTATCTGTCAGGCATTAATCGATTATATTAATAGTGACTTTGATATTGACATTTACTGGAAAACTTTGAATGAGAATGGAATCACAAAAGAACGACTTCTGAGCTACGATCGTGCAATCCATTCTGAGCCAAATTTTAGGAGAGACCAGAAGGATGGCCTTTTGCGTGATCTAGGAAGCTACATGAGAACGTTGAAGGCAGTTCATTCAGGTGCAGATCTAGAATCTGCTGTTCAAAACTGCTTGGGCTATAGATCTGAGGGTCAAGGCTTCATGGTTGGGGTGCAGATAAATCCTATTGCTGGTTTACCATCTGGATTTACGGATTTGCTGCAATTTGTTTTAGAACATATTGAAATCAAGAATGTTGAACCACTTCTTGAGGGCTTGCTTGAAGCTCGGCAAGAGCTACGTCCTTTGCTTCTTAAACCTCGAGACCGTCTGAGGGATCTCTTATTTTTGGATATTGCCCTTGATTCTGCTGTTAGGACTGCTGTTGAGAGGGGATATGAGGAACTAAATACTGCAGGACCGGAGAAAATTATGTATTTCATCACTCTTGTTCTGGAGAATCTTGCACTGTCATCAGATGATAATGAGGATCTCATCTACAGCTTGAAGGGATGGGATCTTGCATTAAACCTCACAAGAAGTAACAATGATCATTGGGCATTATATGCGAAGTCTGTGCTTGATAGAACCCGCCTTGCACTTGCAAACAAGGCAGAAACATACCATCGCATCCTGCAGCCATCTGCTGAGTACTTGGGGTCACTGCTTGGAGTAGACCAATGGGCTGTTGACATATTTACTGAAGAAATCATCCGTTCTGGATCAGCTTCCTCTTTATCCTCACTTCTAAATAGACTTGATCCTGTTTTGCGAACAACTGCTAATCTTGGGAGCTGGCAGATTATTAGCCCAGTTGAAGCTGTTGGTTATGTAGTTGTCGTGGATGAGTTGCTTTCTGTTCAGAACAAATCATATGAGAAGCCAACAATTCTAGTTGCAAACCGAGTAAAAGGTGAGGAAGAAATTCCAGATGGTACTGTTGCAGTGTTGACGCCTGATATGCCAGATGTTCTATCTCATGTTTCTGTTCGAGCAAGAAATGGAAAGGTTTGCTTCGCAACATGTTTTGATTCAAATATTTTATCAGACCTTCAAGGTAAAGAAGGGAAGTTGGTGCGTCTAAAGCCTACATCTGCTGATATTGTATATAGCGAGGTAAAGGAGGATGAGGTACCAGATGCAAGTTCCATCCATGAGAATGATGGTGTTCCATCAACGGTAACTCTTGTCAGAAAGCACTTTAGTGGTAAATATGCCATTGTATCTGAAGAGTTCACAAGTGAACTGGTTGGAGCAAAATCACGTAATATTTCTTATCTGAAAGGAAAAGTGCCATCTTGGGTTGGGATCCCTACCTCAGTTGCCCTTCCATTTGGAGTTTTTGAGGAAGTTTTGTCTGATGAATCAAATAAGGTTTTTCTTCTAATTTCCGAATGA 3645 40.93 MSNSISQNILHQRLLRPSVFDNQSKFNPSGTHKNTLFQAALANQVPAQHWKSPISTKFLGNGLNVKKPGMATGTGRRSFPVNPNAVLATDPASKLAGKFKLDENIELQVDVSVPTSGSIRRVNILVTNIAGSLLLHWGAIHDRKDKWALPSCCPDGTQVYKNRALRTPFLKSGSDSTLTIEVDDPAIEAIEFLLLDEAHNKWYKNNDKNFHVTLPVKEKLISDVSVPEELVQIQAYLRWERKGKQMYTPQQEQEEYEAARAELLQELTRGASVQDLRARLTKENDGSETMELSTPKDKTIPDELVQIQAFIRWEKAGKPNYSAKQQLREFEEAKEELLSELTKGATIDEIRKKITKGEIKTEVAKQLQDKKYFRIEKIQRKKRDLVQLVNRYASQPIEETYTAKPKALTEVEKFAKIKEEQDGGEVINKIIYKLGDKDLLVLVTKNASKTKVYLATDLQEPVTLHWGLSKTNAGEWLTPPPDVLPRGSVSLSQAAETQFIFNADGSSLKVQYLEILIEEDGFLGMPFVLQSFGNWIKNKGSSDFYVAFAIQPKKVRKDTEGGKGTAKSLLDNIADLESEAEKSFMHRFNIAADLMDQAKDAGELGLAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLESIYASQPQYRELLRMIMSTVGRGGEGDVGQRIRDEILVIQRNNDCKGGMMEEWHQKLHNNTSPDDVVICQALIDYINSDFDIDIYWKTLNENGITKERLLSYDRAIHSEPNFRRDQKDGLLRDLGSYMRTLKAVHSGADLESAVQNCLGYRSEGQGFMVGVQINPIAGLPSGFTDLLQFVLEHIEIKNVEPLLEGLLEARQELRPLLLKPRDRLRDLLFLDIALDSAVRTAVERGYEELNTAGPEKIMYFITLVLENLALSSDDNEDLIYSLKGWDLALNLTRSNNDHWALYAKSVLDRTRLALANKAETYHRILQPSAEYLGSLLGVDQWAVDIFTEEIIRSGSASSLSSLLNRLDPVLRTTANLGSWQIISPVEAVGYVVVVDELLSVQNKSYEKPTILVANRVKGEEEIPDGTVAVLTPDMPDVLSHVSVRARNGKVCFATCFDSNILSDLQGKEGKLVRLKPTSADIVYSEVKEDEVPDASSIHENDGVPSTVTLVRKHFSGKYAIVSEEFTSELVGAKSRNISYLKGKVPSWVGIPTSVALPFGVFEEVLSDESNKVFLLISE 1214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5219877 5234187 + Lsi04G005720.1 Lsi04g00572 660621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00572 1214 PANTHER PYRUVATE, PHOSPHATE DIKINASE-RELATED 297 1207 - -
Lsi04g00572 1214 PANTHER PYRUVATE, PHOSPHATE DIKINASE-RELATED 7 284 - -
Lsi04g00572 1214 Coils Coil 375 395 - -
Lsi04g00572 1214 PANTHER ALPHA-GLUCAN WATER DIKINASE 1, CHLOROPLASTIC-RELATED 297 1207 - -
Lsi04g00572 1214 PANTHER ALPHA-GLUCAN WATER DIKINASE 1, CHLOROPLASTIC-RELATED 7 284 - -
Lsi04g00572 1214 Coils Coil 320 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00572 K08244 R1; alpha-glucan, water dikinase [EC:2.7.9.4] - csv:101218978 2135.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00572 Lsi-Chr4:5219877 Lsi07g00026 Lsi-Chr7:297714 1.44E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g644 . . . . . . Bma14g01813 . . Cmo18g00786 . Cma18g00782 . Car18g00712 Sed02g0999 Cpe09g00517 . Bhi07g01760 Tan04g1274 Cmetu10g1422 Lac13g0174 Hepe10g1614 . . Cla05g02568 Cam05g2753 Cec05g2786 Cco05g2825 Clacu05g2754 Cmu05g2605 Cre05g2720 Cone13ag1057 Cone19ag1047 . . Lsi04g00572 Csa05g02313 Chy10g00882 Cme10g00548 . Blo11g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011444 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00572 Lsi_Chr04 FPKM 27.932636 30.32906 78.348541 75.187363 37.750416 38.199371 34.976303 132.340897 134.439835 131.78389