Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi04g00573 ATGAAGGGTAATTTGTTGATCAATTTTGCACTAATAATAATTTGCTTCTTCTGTTGCAGCTCAGGCAGAGTGATTGAATCTCCACGTTATAAAGTGATTCATGTAGAATCAGATTTTGAAATCAGACAGTACAAACAAATTTCATGGATGTCTGCTCTTGTTCAAGGAACAGCCTCCTTTGAAAAGTCCACCCAACAAGGCTTCCACAGGTTGTATCAATACATTCATGGTGCTAACAGCAATTCTTCTCACTTTCTTATTACTTCTCCTGTCACAACCACCATTATGGCATCGACACGCGAACCCGAGCGTTTGATTAGGTATTATCTGGCAATTGTGAATGCCGAAACCCCGCCCCTGGCTGATTCTGAACTGAATGTTCAGTTTGAGAAGTGGAGAAGCAATTGCTTGGCAGTCAGGAGGTTTCCTGGATTTGCTAAAGATGATAATATCAACAAAGAAATTGATGCTCTAAAGAGCAGCTTGAGCAAGTATCTACCTGAGAGTGCAGCTATTTCAGAATACACCATTGCTCAGTATAATTCTTCACGTCGCTTGTCGGGGCGTTTGAATGAAGTCTGGCTCGATGTTTCGGGTTTAACTGCAGAGGGATGTCAACCCCTGTAA 627 41.79 MKGNLLINFALIIICFFCCSSGRVIESPRYKVIHVESDFEIRQYKQISWMSALVQGTASFEKSTQQGFHRLYQYIHGANSNSSHFLITSPVTTTIMASTREPERLIRYYLAIVNAETPPLADSELNVQFEKWRSNCLAVRRFPGFAKDDNINKEIDALKSSLSKYLPESAAISEYTIAQYNSSRRLSGRLNEVWLDVSGLTAEGCQPL 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5233131 5234383 - Lsi04G005730.1 Lsi04g00573 660622

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi04g00573 208 SUPERFAMILY Probable bacterial effector-binding domain 16 197 IPR011256 -
Lsi04g00573 208 PANTHER HEME-BINDING PROTEIN-RELATED 9 206 IPR006917 -
Lsi04g00573 208 PANTHER SOUL HEME-BINDING PROTEIN-RELATED 9 206 - -
Lsi04g00573 208 Gene3D Regulatory factor, effector binding domain 24 202 IPR011256 -
Lsi04g00573 208 Pfam SOUL heme-binding protein 25 195 IPR006917 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi04g00573 - - - csv:101213086 377.096
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00573 Lsi-Chr4:5233131 Lsi07g00853 Lsi-Chr7:9596976 5.82E-29 dispersed
Lsi02g00390 Lsi-Chr2:3326058 Lsi04g00573 Lsi-Chr4:5233131 2.47E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g643 . . . . . . . . . Cmo18g00785 . Cma18g00781 . Car18g00711 Sed04g0612 Cpe09g00518 . Bhi07g01761 Tan04g1275 Cmetu10g0269 Lac13g0173 Hepe10g1613 . . Cla05g02569 Cam05g2754 Cec05g2787 Cco05g2826 Clacu05g2755 Cmu05g2606 Cre05g2721 . . . Cone12ag0661 Lsi04g00573 Csa05g02312 Chy10g00881 Cme10g00549 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013582 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi04g00573 Lsi_Chr04 FPKM 166.946014 196.298141 194.485962 206.487122 130.412262 122.577766 127.32679 158.542633 162.033035 161.127869